Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R3L12_RS13630 Genome accession   NZ_CP137057
Coordinates   2907234..2908385 (-) Length   383 a.a.
NCBI ID   WP_334421049.1    Uniprot ID   -
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2902234..2913385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS13610 (R3L12_13590) - 2902812..2903726 (+) 915 WP_004941526.1 DMT family transporter -
  R3L12_RS13615 (R3L12_13595) - 2903964..2904905 (+) 942 WP_004941523.1 LysR substrate-binding domain-containing protein -
  R3L12_RS13620 (R3L12_13600) - 2905214..2906122 (+) 909 WP_004941521.1 hypothetical protein -
  R3L12_RS13625 (R3L12_13605) - 2906622..2907194 (-) 573 WP_004941519.1 L-threonylcarbamoyladenylate synthase -
  R3L12_RS13630 (R3L12_13610) dprA 2907234..2908385 (-) 1152 WP_334421049.1 DNA-processing protein DprA Machinery gene
  R3L12_RS13635 (R3L12_13615) tsaP 2908407..2909549 (-) 1143 WP_104125337.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  R3L12_RS13640 (R3L12_13620) def 2909669..2910193 (+) 525 WP_004944209.1 peptide deformylase -
  R3L12_RS13645 (R3L12_13625) - 2910275..2910706 (+) 432 WP_076033608.1 DUF2946 family protein -
  R3L12_RS13650 (R3L12_13630) - 2910809..2912800 (+) 1992 WP_208478090.1 TonB-dependent copper receptor -
  R3L12_RS13655 - 2912876..2913016 (+) 141 Protein_2657 hypothetical protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41855.36 Da        Isoelectric Point: 6.5896

>NTDB_id=894481 R3L12_RS13630 WP_334421049.1 2907234..2908385(-) (dprA) [Acinetobacter soli strain SNUBHAB0075]
MMKQFSAHHRHTIAVWSLVQHSLSSFDTLVRHFGDCETALEPQNLAKWQQLKLHANHLKRAAEYATPAGQSAFSNLLAHI
QQHTDFIVTPEDPLYPAQLMPYTGKPPILFGRGSAQPLLQPQIAVVGSRKPSPHGRQVAYDFAYYLSEKGFYITSGLAHG
IDEAAHQGSVTQQRAIAVVGTGLDRCYPAGNRTLYESIASQGGAVVSEFLPGTPPLKANFPRRNRIVSGLSLGVLVVEAK
KESGSLITANRAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQILEDLALPTHWHAQSTAAVSATSTPEDVSD
ALAVPEELIPLYQRLDWTGQDLDQLAQQFEGSTAELTGQLMELELLGLCIQQSGRYLRCTGGF

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=894481 R3L12_RS13630 WP_334421049.1 2907234..2908385(-) (dprA) [Acinetobacter soli strain SNUBHAB0075]
ATGATGAAACAATTTTCTGCGCACCATCGCCATACCATTGCAGTATGGTCATTGGTGCAACACTCACTCTCAAGTTTTGA
TACCTTAGTTCGTCATTTTGGCGATTGTGAAACGGCGCTTGAACCTCAGAATCTGGCCAAGTGGCAACAATTAAAGCTAC
ATGCCAATCATCTAAAGCGGGCTGCGGAATACGCAACGCCAGCGGGGCAATCGGCATTTTCAAACTTACTTGCGCACATT
CAGCAACATACTGATTTTATTGTTACGCCAGAAGATCCACTATATCCGGCCCAGTTGATGCCCTATACCGGCAAGCCCCC
AATTTTATTTGGTCGTGGTTCGGCTCAGCCCTTATTACAGCCACAAATTGCCGTGGTGGGCAGTCGTAAACCCAGCCCAC
ATGGTCGGCAAGTGGCCTATGACTTTGCCTATTACCTCAGTGAAAAAGGATTTTATATCACCAGTGGGCTTGCACACGGC
ATTGATGAAGCAGCCCATCAAGGCAGTGTCACGCAGCAACGGGCGATTGCAGTGGTCGGAACTGGATTGGATCGATGTTA
TCCGGCAGGGAATCGTACATTATACGAGAGTATTGCTTCGCAAGGCGGTGCTGTCGTCAGCGAGTTTTTGCCGGGCACAC
CACCGTTAAAGGCCAATTTTCCACGGCGCAACCGTATTGTGAGTGGTTTAAGTTTAGGCGTGTTGGTGGTGGAAGCCAAA
AAAGAGAGTGGCTCACTGATTACCGCGAATCGAGCTGCTGAGCAAGGTAAAACGGTCTTCGCGATTCCGGGACATATTTA
TAGTGAGTTTCATCAAGGCTGCCATCAATTGATTCGAGAAGGAGCAATTTTGGTGGATCATCCGGAGCAAATTCTGGAAG
ATTTAGCGCTTCCCACACATTGGCATGCTCAATCTACGGCAGCAGTCTCGGCCACCTCTACCCCTGAGGATGTATCCGAT
GCCTTGGCTGTTCCCGAAGAACTGATTCCGCTTTATCAGCGCTTAGACTGGACGGGACAAGACCTCGATCAGTTGGCACA
GCAGTTTGAAGGCTCGACCGCAGAGCTGACCGGTCAACTCATGGAACTTGAACTGTTGGGACTGTGCATTCAGCAGTCGG
GACGTTATCTGCGTTGTACTGGCGGATTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(86-286)

DprA winged helix domain (DprA_WH)

(327-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baylyi ADP1

74.406

98.956

0.736
  dprA Acinetobacter baumannii strain A118

67.717

99.478

0.674
  dprA Acinetobacter baumannii D1279779

67.454

99.478

0.671
  dprA Neisseria gonorrhoeae MS11

38.36

98.695

0.379
  dprA Neisseria gonorrhoeae strain FA1090

38.095

98.695

0.376
  dprA Haemophilus influenzae Rd KW20

42.683

85.64

0.366