Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AAVB98_RS00440 Genome accession   NZ_CP154895
Coordinates   89198..89560 (-) Length   120 a.a.
NCBI ID   WP_003154238.1    Uniprot ID   A0A150FA43
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 84198..94560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS00415 (AAVB98_00415) flhB 85723..86802 (-) 1080 WP_061573891.1 flagellar biosynthesis protein FlhB -
  AAVB98_RS00420 (AAVB98_00420) fliR 86802..87581 (-) 780 WP_013352271.1 flagellar biosynthetic protein FliR -
  AAVB98_RS00425 (AAVB98_00425) fliQ 87588..87857 (-) 270 WP_013352270.1 flagellar biosynthesis protein FliQ -
  AAVB98_RS00430 (AAVB98_00430) fliP 87872..88537 (-) 666 WP_013352269.1 flagellar type III secretion system pore protein FliP -
  AAVB98_RS00435 (AAVB98_00435) fliZ 88530..89183 (-) 654 WP_013352268.1 flagella biosynthesis regulatory protein FliZ -
  AAVB98_RS00440 (AAVB98_00440) pilH 89198..89560 (-) 363 WP_003154238.1 chemotaxis protein CheY Machinery gene
  AAVB98_RS00445 (AAVB98_00445) fliY 89587..90720 (-) 1134 WP_013352267.1 flagellar motor switch phosphatase FliY -
  AAVB98_RS00450 (AAVB98_00450) fliM 90710..91708 (-) 999 WP_013352266.1 flagellar motor switch protein FliM -
  AAVB98_RS00455 (AAVB98_00455) fliL 91742..92161 (-) 420 WP_013352265.1 flagellar basal body-associated protein FliL -
  AAVB98_RS00460 (AAVB98_00460) - 92158..92373 (-) 216 WP_013352264.1 flagellar FlbD family protein -
  AAVB98_RS00465 (AAVB98_00465) flgG 92413..93189 (-) 777 WP_013352263.1 flagellar basal body rod protein FlgG -
  AAVB98_RS00470 (AAVB98_00470) flgD 93214..93645 (-) 432 WP_013352262.1 flagellar hook assembly protein FlgD -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13209.53 Da        Isoelectric Point: 4.6805

>NTDB_id=894476 AAVB98_RS00440 WP_003154238.1 89198..89560(-) (pilH) [Bacillus amyloliquefaciens strain Fad 77]
MAHRILIVDDAAFMRMMIKDILVKNGFDVVAEASDGAQAVEKFKEHSPDLVTMDITMPEMDGITALKEIKQIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=894476 AAVB98_RS00440 WP_003154238.1 89198..89560(-) (pilH) [Bacillus amyloliquefaciens strain Fad 77]
ATGGCACACAGAATTTTAATTGTAGACGATGCAGCATTTATGAGAATGATGATCAAGGATATTTTAGTGAAGAACGGTTT
TGACGTTGTAGCTGAAGCTTCGGACGGAGCACAGGCAGTCGAAAAATTCAAAGAGCATTCACCCGACCTTGTGACAATGG
ATATTACAATGCCTGAAATGGACGGGATTACCGCATTAAAGGAAATTAAACAAATCGATCCGCAGGCGAAAATCATCATG
TGTTCGGCTATGGGGCAGCAGTCAATGGTTATTGACGCGATTCAAGCCGGCGCAAAAGACTTTATCGTGAAGCCATTCCA
AGCAGACCGCGTGCTTGAAGCCATTAATAAAACATTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150FA43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.983

98.333

0.383