Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   R3L12_RS11195 Genome accession   NZ_CP137057
Coordinates   2358115..2360211 (-) Length   698 a.a.
NCBI ID   WP_171490462.1    Uniprot ID   -
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2353115..2365211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS11180 (R3L12_11160) - 2355566..2356414 (-) 849 WP_149930044.1 hypothetical protein -
  R3L12_RS11185 (R3L12_11165) aroB 2356424..2357512 (-) 1089 WP_149930045.1 3-dehydroquinate synthase -
  R3L12_RS11190 (R3L12_11170) aroK 2357536..2358078 (-) 543 WP_004934229.1 shikimate kinase AroK -
  R3L12_RS11195 (R3L12_11175) comQ 2358115..2360211 (-) 2097 WP_171490462.1 type IV pilus secretin PilQ family protein Machinery gene
  R3L12_RS11200 (R3L12_11180) comL 2360271..2360795 (-) 525 WP_004934225.1 pilus assembly protein PilP Machinery gene
  R3L12_RS11205 (R3L12_11185) comO 2360795..2361529 (-) 735 WP_055415626.1 type 4a pilus biogenesis protein PilO Machinery gene
  R3L12_RS11210 (R3L12_11190) comN 2361526..2362164 (-) 639 WP_149930066.1 PilN domain-containing protein Machinery gene
  R3L12_RS11215 (R3L12_11195) comM 2362151..2363221 (-) 1071 WP_055415627.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 75400.88 Da        Isoelectric Point: 8.8498

>NTDB_id=894473 R3L12_RS11195 WP_171490462.1 2358115..2360211(-) (comQ) [Acinetobacter soli strain SNUBHAB0075]
MKQVIRQFTMASVTYAVMQVASAQIAITNVVPMTIPGQGTEVRIMFNGLPPQPQSYQLEQPSRLILDFDQATQKLAKRSI
ALTSNEASGIEVSADEKRARVTVNLKNSGAFTTRVEGNVFILKINNLASAATPLAAPAPKNQLSIGNIGFQKGAQGEGQV
VIDLQGSTTPVDVQQEGSKVVVRFPGIKIPTHLARRLNTTEFATPVASIDAFNNGSNGVVSIQSTGSYEYMAYQAENKLT
ISLKRPQDNVRLNSKNNQNYTGKKISLDFQDIEVRRVLQLLADFTNINMVTADSVQGNITLRLKDVPWDQALDIILKTKN
LDKRRNGNVIWIAPVTEMIKSEEDEAKAIAQSTKLSPLQTEFIQLKYAKAVDIEKLITQGRNSGTTSTATTGGATVEPLG
DSVGTLLSPRGTISFDPRTNTLILNDTAQKIDQIRRMIDLLDIPVKQVMIEARIVRASTSFSKEMGVKWGVLSTGNDLQV
TGKNSTLWNLRNGDTINNNLSVDLGVSTAGASSISFGLISLSDFMLDLELSALQADGYGEVISTPKVMSADKQKAKVATG
VEVPYQSTTNSAAGSTATTSFKEALLSLEVTPNITPDGKILMELNIANDSINSYAQNGEAILNKNAINTNVLVNNGETVV
LGGVFEQITSNAVTKVPFLGDLPYVGHLFKKTAKSEAKNELLIFVTPRIVNDTIVGNH

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=894473 R3L12_RS11195 WP_171490462.1 2358115..2360211(-) (comQ) [Acinetobacter soli strain SNUBHAB0075]
ATGAAACAGGTAATTCGTCAATTTACGATGGCAAGTGTGACCTATGCCGTGATGCAAGTTGCAAGTGCGCAGATCGCCAT
TACCAATGTCGTCCCGATGACAATTCCGGGACAAGGGACCGAAGTGCGGATTATGTTTAATGGACTGCCGCCACAACCTC
AGTCGTATCAACTTGAGCAGCCTTCTCGTCTGATTCTGGATTTCGATCAAGCCACGCAAAAACTGGCCAAACGCAGTATT
GCGCTCACCAGTAATGAAGCCTCGGGAATTGAAGTCAGTGCAGATGAAAAACGCGCCCGTGTCACGGTGAATCTTAAAAA
TTCAGGTGCGTTTACCACACGTGTAGAAGGCAATGTCTTCATTCTTAAAATTAATAATCTGGCCTCTGCCGCGACCCCAC
TTGCCGCTCCAGCCCCAAAAAACCAGCTTTCTATTGGAAATATTGGATTTCAAAAAGGAGCACAAGGTGAAGGGCAGGTG
GTGATTGATCTGCAAGGCAGTACCACGCCTGTCGATGTGCAGCAAGAAGGCAGCAAGGTGGTGGTGCGTTTTCCTGGCAT
AAAAATTCCGACGCATCTGGCGCGCCGCCTGAATACCACCGAGTTTGCCACGCCTGTGGCATCGATTGATGCATTCAATA
ATGGCAGCAACGGTGTGGTCTCGATTCAGTCGACGGGTAGTTATGAATACATGGCGTATCAAGCCGAAAATAAACTTACC
ATTAGTCTAAAGCGCCCACAAGATAATGTCAGACTAAACTCAAAAAACAACCAAAACTATACGGGTAAGAAGATTTCACT
GGATTTTCAAGACATTGAAGTACGCCGCGTATTACAGTTACTGGCCGATTTTACCAATATCAATATGGTGACCGCAGATT
CTGTACAAGGCAATATTACCTTGCGCCTTAAAGACGTGCCGTGGGATCAGGCGCTGGATATTATTTTAAAAACCAAAAAT
CTGGACAAGCGCCGTAATGGGAATGTGATCTGGATAGCGCCTGTCACCGAGATGATCAAGTCTGAAGAAGATGAAGCCAA
AGCGATTGCACAAAGTACCAAGCTCTCGCCGTTACAAACCGAGTTTATTCAGCTTAAATATGCTAAAGCGGTAGATATTG
AAAAATTGATTACTCAAGGTCGAAACAGCGGTACTACCAGTACTGCTACGACTGGTGGTGCGACGGTGGAGCCTTTGGGC
GATAGCGTTGGCACTTTGTTAAGCCCGCGTGGCACGATTTCTTTTGATCCGCGTACCAACACTCTTATTTTAAATGACAC
TGCGCAAAAGATTGACCAGATCCGACGCATGATTGATTTGCTGGATATTCCGGTGAAACAAGTCATGATTGAAGCACGGA
TTGTGCGTGCATCGACCTCGTTTAGTAAAGAAATGGGAGTGAAATGGGGCGTCTTGTCGACAGGCAATGATTTACAGGTC
ACAGGTAAAAATTCAACCTTATGGAACTTGCGTAATGGCGACACCATTAACAATAACTTAAGTGTTGACTTAGGGGTATC
GACAGCAGGCGCCAGCAGTATTTCATTTGGTTTAATCAGTTTGTCTGATTTTATGCTGGACTTGGAGCTGTCTGCCTTGC
AGGCTGACGGATACGGCGAAGTGATTTCAACACCGAAAGTGATGTCCGCCGACAAGCAAAAAGCCAAAGTAGCAACCGGT
GTGGAAGTGCCGTATCAGTCCACCACCAACTCGGCAGCAGGATCAACTGCCACAACCTCATTTAAAGAAGCATTGCTCAG
TCTGGAAGTCACACCCAACATTACCCCAGATGGTAAAATTTTGATGGAACTGAATATTGCCAATGACTCGATCAATAGTT
ATGCCCAAAATGGTGAGGCCATTTTAAATAAAAATGCGATCAATACCAATGTCTTGGTGAATAACGGTGAAACAGTTGTC
TTGGGTGGTGTATTCGAACAAATCACGTCTAATGCGGTGACTAAAGTGCCATTTTTAGGTGATTTGCCTTATGTGGGGCA
TTTATTTAAAAAGACCGCAAAAAGTGAAGCGAAAAATGAACTGCTAATTTTTGTGACACCTCGAATAGTTAATGACACTA
TTGTTGGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(361-447)

Bacterial type II and III secretion system protein (Secretin)

(532-690)

Secretin and TonB N terminus short domain (STN)

(291-334)

AMIN domain (AMIN)

(38-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Acinetobacter baylyi ADP1

86.46

100

0.878
  pilQ Acinetobacter baumannii D1279779

69.284

100

0.721
  pilQ Acinetobacter baumannii strain A118

69.284

100

0.721
  pilQ Pseudomonas aeruginosa PAK

40.571

100

0.407
  pilQ Legionella pneumophila strain ERS1305867

38.462

98.711

0.38
  pilQ Legionella pneumophila strain Lp02

38.316

98.711

0.378