Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AAVD18_RS20895 Genome accession   NZ_CP154893
Coordinates   3994992..3996809 (+) Length   605 a.a.
NCBI ID   WP_061573699.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3989992..4001809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS20885 (AAVD18_20885) - 3990673..3992997 (+) 2325 WP_014471580.1 peptidase G2 autoproteolytic cleavage domain-containing protein -
  AAVD18_RS20890 (AAVD18_20890) - 3993278..3995011 (+) 1734 WP_013351418.1 ABC transporter ATP-binding protein -
  AAVD18_RS20895 (AAVD18_20895) rcrQ 3994992..3996809 (+) 1818 WP_061573699.1 ABC transporter ATP-binding protein Regulator
  AAVD18_RS20900 (AAVD18_20900) - 3996976..3997380 (+) 405 WP_013351420.1 DoxX family protein -
  AAVD18_RS20905 (AAVD18_20905) - 3997397..3998254 (+) 858 WP_014469921.1 VOC family protein -
  AAVD18_RS20910 (AAVD18_20910) cyoE 3998544..3999490 (+) 947 Protein_4063 heme o synthase -
  AAVD18_RS20915 (AAVD18_20915) - 3999526..4000077 (-) 552 WP_013351422.1 PadR family transcriptional regulator -
  AAVD18_RS20920 (AAVD18_20920) - 4000316..4000918 (+) 603 WP_013351423.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67594.42 Da        Isoelectric Point: 9.5379

>NTDB_id=894473 AAVD18_RS20895 WP_061573699.1 3994992..3996809(+) (rcrQ) [Bacillus amyloliquefaciens strain Fad 11/2]
MQKDIRKPFRYPKIPLKSNEGGRKRAKAKDTKGTLRRIWSYVAEKKGLLSLVIIMVVISAIFGLLGPFVIGKAIDHFIVG
RMTDGLAGVLFILFGIYLVQSLSLWFQNYWMINISQSTVFKMRSELFTHLHELPIPFFDKQRLGDLMSRVTNDIENVSST
LNTSVIQVLSSVITFVGTIAVMLYMSPLLTLITLLIIPIMFLSIKWITSRTGLLFKQQQKNLGELNGFIEESISGAKVIK
AYSREDRVMEQFLEKNAALKSSGFWAQTISGFIPKVMNSLNNLSFTIIAAVGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEEHALYQPIKTGEIEFRDVSFGYQEDSLILKHLSFSVPQGKSIAFVGP
TGAGKTTVTSLIARFYEPNEGKILIDGTDIKKLTRSSLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDLEVEEAAKAAN
AHGFIERLPKGYDTVLTQNGAGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVKIQEALGRLMAGRTSVIIAHR
LNTIQKADQILVLKDGEMAEKGTHAELLSQNGFYRELYESQFRES

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=894473 AAVD18_RS20895 WP_061573699.1 3994992..3996809(+) (rcrQ) [Bacillus amyloliquefaciens strain Fad 11/2]
GTGCAGAAAGACATTCGTAAACCTTTCCGATATCCGAAAATACCGCTCAAATCAAATGAAGGCGGCAGAAAACGCGCGAA
AGCAAAAGATACAAAAGGCACGCTGCGCAGGATCTGGTCTTATGTAGCCGAGAAAAAAGGGCTTTTGTCCCTCGTGATCA
TCATGGTAGTCATAAGCGCCATATTTGGCCTCCTCGGACCGTTCGTCATCGGGAAAGCGATTGATCATTTCATCGTCGGG
CGGATGACAGACGGATTGGCGGGGGTGCTGTTCATACTGTTTGGGATTTACCTCGTGCAATCATTGTCCTTATGGTTTCA
AAACTATTGGATGATCAATATTTCTCAAAGCACCGTGTTTAAAATGCGGAGCGAGCTGTTTACTCATCTGCATGAACTGC
CGATTCCGTTTTTTGATAAACAGCGGCTCGGCGACTTGATGAGCCGGGTCACCAATGATATTGAAAATGTCAGCTCCACT
TTAAATACATCAGTCATTCAGGTGCTGTCGAGCGTCATTACATTCGTCGGCACAATCGCCGTCATGCTGTACATGAGCCC
GCTTTTAACATTGATCACGCTCTTGATTATTCCGATCATGTTTTTGAGCATTAAATGGATCACCAGCCGGACGGGACTGC
TCTTTAAGCAGCAACAGAAAAACCTCGGCGAGCTGAACGGTTTTATTGAAGAGTCGATATCAGGAGCGAAAGTCATTAAA
GCCTACTCGAGGGAAGACCGCGTCATGGAGCAATTTTTAGAAAAAAACGCGGCGTTAAAATCATCGGGATTTTGGGCGCA
GACCATTTCGGGATTCATTCCGAAAGTAATGAACTCTTTAAACAATTTAAGCTTTACGATTATAGCGGCGGTCGGCGGGC
TGTTTGCGCTGAAAGGGTGGATCTCAATCGGTTCCATCGTCGTATTCGCCGAATACTCACGGCAGTTCACGCGCCCTCTG
AATGATTTAGCCAATCAGTTCAACACGATGTTATCGGCCATCGCCGGGGCTGAACGGGTGTTTGACGTGCTTGATGAAAA
AGAGGAGCGGGAAGACGAAGAGCATGCGCTGTACCAGCCGATCAAAACGGGAGAGATTGAATTCCGAGATGTCTCCTTCG
GCTATCAGGAAGACAGCCTGATCTTAAAACATCTGTCCTTCAGCGTTCCGCAAGGAAAGTCAATCGCCTTTGTCGGCCCG
ACCGGAGCGGGTAAAACAACCGTCACAAGTCTGATCGCCCGCTTTTACGAGCCGAATGAAGGGAAAATTCTTATCGACGG
AACGGACATCAAAAAACTGACGAGATCCAGTCTGAGAAAAAATATGGGGTTTGTCCTGCAGGATTCATTTCTTTTTCAGG
GCACCATCAGGGAAAATATCCGCTACGGCCGCTTGGATGCATCTGACTTAGAGGTGGAGGAAGCCGCTAAAGCCGCCAAT
GCCCACGGATTCATTGAACGGCTCCCCAAAGGCTACGATACCGTTCTTACCCAAAACGGCGCGGGCATCAGCCAAGGCCA
AAAACAGCTCATTTCCATTGCGAGAGCTGTGCTGGCCGACCCGGTTCTGCTCATTTTGGATGAAGCGACAAGCAACATTG
ATACGGTGACGGAAGTGAAAATACAAGAAGCGCTCGGCCGTTTAATGGCGGGCAGAACAAGCGTCATCATCGCTCACAGG
CTGAATACGATTCAAAAAGCCGATCAGATTCTTGTGCTGAAAGACGGCGAAATGGCTGAAAAAGGAACCCATGCCGAACT
TCTCAGCCAGAACGGTTTTTACCGGGAATTATATGAAAGCCAGTTCAGGGAATCATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(50-320)

ABC transporter (ABC_tran)

(382-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.593

96.364

0.372