Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   R3L12_RS11205 Genome accession   NZ_CP137057
Coordinates   2360795..2361529 (-) Length   244 a.a.
NCBI ID   WP_055415626.1    Uniprot ID   A0AB38YYY1
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2355795..2366529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS11185 (R3L12_11165) aroB 2356424..2357512 (-) 1089 WP_149930045.1 3-dehydroquinate synthase -
  R3L12_RS11190 (R3L12_11170) aroK 2357536..2358078 (-) 543 WP_004934229.1 shikimate kinase AroK -
  R3L12_RS11195 (R3L12_11175) comQ 2358115..2360211 (-) 2097 WP_171490462.1 type IV pilus secretin PilQ family protein Machinery gene
  R3L12_RS11200 (R3L12_11180) comL 2360271..2360795 (-) 525 WP_004934225.1 pilus assembly protein PilP Machinery gene
  R3L12_RS11205 (R3L12_11185) comO 2360795..2361529 (-) 735 WP_055415626.1 type 4a pilus biogenesis protein PilO Machinery gene
  R3L12_RS11210 (R3L12_11190) comN 2361526..2362164 (-) 639 WP_149930066.1 PilN domain-containing protein Machinery gene
  R3L12_RS11215 (R3L12_11195) comM 2362151..2363221 (-) 1071 WP_055415627.1 pilus assembly protein PilM Machinery gene
  R3L12_RS11220 (R3L12_11200) ponA 2363388..2365919 (+) 2532 WP_149930047.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27612.51 Da        Isoelectric Point: 6.2643

>NTDB_id=894475 R3L12_RS11205 WP_055415626.1 2360795..2361529(-) (comO) [Acinetobacter soli strain SNUBHAB0075]
MKRDPVDHTAPEQAPVQKKRMTVDKFFQQFNTLDMSNYGSWPKSVKITCWIFIFFLVVALGYFVMIRPQLDAIQTARAQE
QNLLNEFKEKESKLRNLQQYQRQLVEMQASFNQQLTQLPKESEIPGLVEDINMTGVNSGLKFKNIRLENEVKQEIFVEQP
ISIEATGDYHAFGAFVSGISALPRIVTMHDFVIEAKPAKETSDIPQVDYSVKAKTYRYIGVDEQNAASSVQPYAAPAAAQ
GGTP

Nucleotide


Download         Length: 735 bp        

>NTDB_id=894475 R3L12_RS11205 WP_055415626.1 2360795..2361529(-) (comO) [Acinetobacter soli strain SNUBHAB0075]
ATGAAACGAGATCCAGTCGATCACACGGCACCTGAGCAAGCACCTGTGCAGAAAAAACGCATGACGGTGGATAAGTTTTT
TCAGCAGTTTAATACGCTCGACATGAGCAATTACGGGAGTTGGCCCAAATCGGTCAAAATCACCTGCTGGATATTTATTT
TTTTCTTAGTGGTGGCGCTTGGTTATTTTGTCATGATTCGTCCGCAGTTAGACGCCATACAGACCGCGCGTGCGCAAGAA
CAAAACCTTCTGAATGAGTTTAAAGAAAAAGAATCCAAACTACGCAATCTACAGCAGTATCAGCGTCAATTGGTCGAAAT
GCAGGCCAGCTTTAATCAGCAACTGACGCAGCTTCCAAAGGAAAGTGAGATTCCGGGCTTGGTAGAAGACATCAACATGA
CGGGTGTGAACTCGGGTTTAAAATTTAAAAATATTCGGCTTGAAAATGAGGTCAAACAAGAAATTTTTGTAGAGCAGCCA
ATTTCGATTGAAGCCACGGGTGACTACCATGCTTTTGGTGCCTTTGTCAGTGGTATTTCGGCCTTGCCGCGTATCGTGAC
CATGCATGATTTTGTCATTGAAGCAAAACCTGCCAAAGAAACCTCGGATATTCCGCAGGTCGATTACAGCGTCAAGGCGA
AAACATATCGTTATATCGGTGTAGACGAGCAAAACGCTGCCTCGTCGGTTCAGCCATATGCTGCACCCGCAGCAGCACAA
GGGGGGACACCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

81.224

100

0.816
  pilO Acinetobacter baumannii D1279779

70.417

98.361

0.693