Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   R3L12_RS09950 Genome accession   NZ_CP137057
Coordinates   2112271..2112657 (-) Length   128 a.a.
NCBI ID   WP_149930543.1    Uniprot ID   -
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2107271..2117657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS09920 (R3L12_09900) - 2107360..2107629 (-) 270 WP_025096094.1 HPr family phosphocarrier protein -
  R3L12_RS09925 (R3L12_09905) rapZ 2107626..2108477 (-) 852 WP_004940495.1 RNase adapter RapZ -
  R3L12_RS09930 (R3L12_09910) panC 2108499..2109344 (-) 846 WP_004940498.1 pantoate--beta-alanine ligase -
  R3L12_RS09935 (R3L12_09915) panB 2109348..2110157 (-) 810 WP_149930540.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  R3L12_RS09940 (R3L12_09920) folK 2110197..2110682 (-) 486 WP_149930541.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  R3L12_RS09945 (R3L12_09925) pcnB 2110679..2112145 (-) 1467 WP_149930542.1 polynucleotide adenylyltransferase PcnB -
  R3L12_RS09950 (R3L12_09930) comEA 2112271..2112657 (-) 387 WP_149930543.1 ComEA family DNA-binding protein Machinery gene
  R3L12_RS09955 (R3L12_09935) mazG 2112654..2113427 (-) 774 WP_004945376.1 nucleoside triphosphate pyrophosphohydrolase -
  R3L12_RS09960 (R3L12_09940) - 2113549..2114325 (+) 777 WP_004940515.1 SDR family oxidoreductase -
  R3L12_RS09965 (R3L12_09945) - 2114381..2116687 (-) 2307 WP_004940517.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14505.57 Da        Isoelectric Point: 10.2106

>NTDB_id=894464 R3L12_RS09950 WP_149930543.1 2112271..2112657(-) (comEA) [Acinetobacter soli strain SNUBHAB0075]
MMIRIFYGALCALITSLLFSSSLYAQAFDQQYQAWKSQQQAHDARLQSSHSNYYLAKPSLQANTGPKVNINTATAKDLQQ
LHGVGEKKALSIVEYRQQYGRFNSVDDLQKVKGIGPKFIEKNRHRLAI

Nucleotide


Download         Length: 387 bp        

>NTDB_id=894464 R3L12_RS09950 WP_149930543.1 2112271..2112657(-) (comEA) [Acinetobacter soli strain SNUBHAB0075]
ATGATGATTCGAATTTTTTATGGCGCCTTGTGCGCGCTAATCACCAGTTTACTATTCAGTTCAAGTTTGTATGCTCAGGC
GTTTGACCAGCAATACCAAGCGTGGAAAAGCCAGCAACAGGCACACGACGCACGACTACAGTCATCTCACTCCAATTATT
ATTTAGCCAAACCTTCCTTGCAGGCAAACACAGGCCCTAAAGTGAATATCAATACTGCGACAGCCAAAGACTTGCAGCAG
TTACATGGGGTAGGAGAGAAAAAGGCACTCTCAATTGTAGAGTACCGCCAGCAATACGGACGCTTTAACTCAGTAGATGA
TTTACAGAAAGTGAAAGGTATTGGGCCTAAATTCATTGAAAAAAATCGTCATCGCTTAGCCATTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(66-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baylyi ADP1

68.75

100

0.688
  comEA Acinetobacter baumannii strain A118

45.161

96.875

0.437
  comEA Acinetobacter baumannii D1279779

41.27

98.438

0.406