Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   R3L12_RS06945 Genome accession   NZ_CP137057
Coordinates   1451991..1452695 (+) Length   234 a.a.
NCBI ID   WP_004936591.1    Uniprot ID   A0A1P8EI34
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1446991..1457695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS06920 (R3L12_06910) - 1447273..1448022 (-) 750 WP_149930443.1 alpha/beta hydrolase -
  R3L12_RS06925 (R3L12_06915) - 1448031..1449443 (-) 1413 WP_348889584.1 amino acid permease -
  R3L12_RS06930 (R3L12_06920) kynU 1449482..1450732 (-) 1251 WP_149930445.1 kynureninase -
  R3L12_RS06935 (R3L12_06925) gigD 1450880..1451332 (+) 453 WP_088459513.1 Lrp/AsnC family transcriptional regulator GigD -
  R3L12_RS06940 (R3L12_06930) - 1451424..1451846 (-) 423 WP_004936595.1 OsmC family protein -
  R3L12_RS06945 (R3L12_06935) crp 1451991..1452695 (+) 705 WP_004936591.1 cAMP-activated global transcriptional regulator CRP Regulator
  R3L12_RS06950 (R3L12_06940) - 1452860..1453906 (+) 1047 WP_149930446.1 NADP(H)-dependent aldo-keto reductase -
  R3L12_RS06955 (R3L12_06945) - 1453960..1454739 (-) 780 WP_004936586.1 M48 family metallopeptidase -
  R3L12_RS06960 (R3L12_06950) - 1454855..1455166 (-) 312 WP_004946486.1 hypothetical protein -
  R3L12_RS06965 (R3L12_06955) - 1455276..1456595 (-) 1320 WP_149930447.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26335.88 Da        Isoelectric Point: 4.7318

>NTDB_id=894457 R3L12_RS06945 WP_004936591.1 1451991..1452695(+) (crp) [Acinetobacter soli strain SNUBHAB0075]
MTSNFSQLSTDALSPGQLPESVKALLKRANINRYPKRTTIVDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFESNPQRTAEVRTRDVCEIAEISYDNFHELSKQFPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LASQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEAQNYHDDETDDE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=894457 R3L12_RS06945 WP_004936591.1 1451991..1452695(+) (crp) [Acinetobacter soli strain SNUBHAB0075]
ATGACATCAAATTTCTCACAACTTAGTACAGATGCTCTATCACCTGGTCAGTTACCTGAATCAGTCAAAGCACTATTAAA
AAGAGCAAACATCAATCGTTATCCAAAACGTACCACGATCGTTGATGCAGGTTCAGAATCTAAGTCTTTATATTTGATTT
TAAAAGGTTCAGTTTCCATTATTTTACGTGAAGATGACGAGCGTGAAATCGTTGTGGCTTATCTCAATCCAGGCGACTTC
TTTGGCGAGATGGGACTGTTCGAATCGAACCCACAACGTACAGCAGAAGTAAGAACGCGTGATGTATGTGAAATTGCTGA
AATCTCTTACGATAATTTTCATGAACTCAGCAAGCAATTTCCAGACTTAAGCTATGCGGTTTTTGCTCAGTTGGTGCGTC
GCCTGAAAAATACCACGCGTAAAGTGACCGATCTTGCGTTTATCGATGTGTCGGGCCGTATTGCACGTTGCCTCATCGAT
CTTGCGAGCCAGCCAGAAGCTATGATTTTACCGAATGGTCGTCAGATTCGAATCACACGCCAAGAAATTGGCCGGATTGT
TGGTTGTTCTCGTGAAATGGTAGGTCGTGTTTTAAAAACGCTTGAAGAGCAAGGCATGATTGAAACCGATGGTAAAGCAA
TCCTGATTTTTGACGCTTCTTTAGAAGCACAAAATTATCACGATGATGAAACTGATGACGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-119)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8EI34

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

92.308

100

0.923
  crp Vibrio cholerae strain A1552

48.058

88.034

0.423
  crp Haemophilus influenzae Rd KW20

48.718

83.333

0.406