Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   R3L13_RS08935 Genome accession   NZ_CP137055
Coordinates   1860084..1860824 (-) Length   246 a.a.
NCBI ID   WP_000081156.1    Uniprot ID   A0A009SCU3
Organism   Acinetobacter baumannii strain SNUBHAB0137     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1855084..1865824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L13_RS08915 (R3L13_08935) aroB 1855626..1856708 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  R3L13_RS08920 (R3L13_08940) aroK 1856737..1857306 (-) 570 WP_000643712.1 shikimate kinase AroK -
  R3L13_RS08925 (R3L13_08945) pilQ 1857318..1859483 (-) 2166 WP_002062175.1 type IV pilus secretin PilQ family protein Machinery gene
  R3L13_RS08930 (R3L13_08950) pilP 1859546..1860073 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  R3L13_RS08935 (R3L13_08955) pilO 1860084..1860824 (-) 741 WP_000081156.1 type 4a pilus biogenesis protein PilO Machinery gene
  R3L13_RS08940 (R3L13_08960) pilN 1860821..1861462 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  R3L13_RS08945 (R3L13_08965) pilM 1861462..1862520 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  R3L13_RS08950 (R3L13_08970) ponA 1862683..1865238 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27818.60 Da        Isoelectric Point: 4.9608

>NTDB_id=894422 R3L13_RS08935 WP_000081156.1 1860084..1860824(-) (pilO) [Acinetobacter baumannii strain SNUBHAB0137]
MSQNELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=894422 R3L13_RS08935 WP_000081156.1 1860084..1860824(-) (pilO) [Acinetobacter baumannii strain SNUBHAB0137]
ATGAGTCAAAACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009SCU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679