Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AAVD18_RS11480 Genome accession   NZ_CP154893
Coordinates   2165674..2166804 (-) Length   376 a.a.
NCBI ID   WP_013353308.1    Uniprot ID   A0A9P1JJI8
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2160674..2171804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS11455 (AAVD18_11455) - 2160889..2161557 (+) 669 WP_013353302.1 TrkA family potassium uptake protein -
  AAVD18_RS11460 (AAVD18_11460) - 2161581..2162426 (-) 846 WP_013353303.1 glucosaminidase domain-containing protein -
  AAVD18_RS11465 (AAVD18_11465) hmpA 2162566..2163741 (-) 1176 WP_013353304.1 NO-inducible flavohemoprotein -
  AAVD18_RS11470 (AAVD18_11470) - 2163958..2164598 (+) 641 Protein_2241 cupin domain-containing protein -
  AAVD18_RS11475 (AAVD18_11475) - 2164658..2164981 (-) 324 WP_013353306.1 hypothetical protein -
  AAVD18_RS11480 (AAVD18_11480) rapC 2165674..2166804 (-) 1131 WP_013353308.1 tetratricopeptide repeat protein Regulator
  AAVD18_RS11485 (AAVD18_11485) - 2167192..2167395 (+) 204 WP_014470862.1 hypothetical protein -
  AAVD18_RS11495 (AAVD18_11495) - 2167714..2168544 (-) 831 WP_038463014.1 undecaprenyl-diphosphate phosphatase -
  AAVD18_RS11500 (AAVD18_11500) - 2168636..2169796 (-) 1161 WP_013353344.1 AI-2E family transporter -
  AAVD18_RS11505 (AAVD18_11505) - 2169975..2170961 (+) 987 WP_013353345.1 Gfo/Idh/MocA family oxidoreductase -
  AAVD18_RS11510 (AAVD18_11510) - 2170993..2171517 (-) 525 WP_013353346.1 type 1 glutamine amidotransferase domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44372.86 Da        Isoelectric Point: 6.5099

>NTDB_id=894415 AAVD18_RS11480 WP_013353308.1 2165674..2166804(-) (rapC) [Bacillus amyloliquefaciens strain Fad 11/2]
MSPVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYSLMKFRHQLMLDYLEPVTVRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLIHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYVDFKRYEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYSKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIYQGDKLFESLQKYLEALYINAIDQMGIKKT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYIYHQKMIQTQKQIQRGECLYEF

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=894415 AAVD18_RS11480 WP_013353308.1 2165674..2166804(-) (rapC) [Bacillus amyloliquefaciens strain Fad 11/2]
GTGAGTCCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAGATAAACGAGATGGAAGAAGACGAGTATTTACTAATATATTATT
CTCTCATGAAATTCCGCCATCAACTCATGCTTGATTATTTAGAGCCGGTAACTGTCAGAGTCCGACCGACAATCGACGAG
TTGCTGGAAAAAATCGAAGCATCAAATAAAGGCATTTCCGGCCTGCTGTGCTATTATTCTTTATTTTTTCGCGGCATGTA
TGAATTTGATCAGAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCATTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCCATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAAGTCCGGAAAATTCAATGTCTGTTCGTCATATCTGG
GAATTATGTTGACTTTAAACGTTATGAAAAAAGTTTGCCGCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACTTAGAAGAATACAGTAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATTTCTGAAAAGTATAAATTGGGCAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGCAAAAAAGGACTTTCATCAGCTATATATCAAGGGG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATACATTAACGCAATAGACCAAATGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAGTC
AAAGCAATATGACAAATCATATATTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(193-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JJI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.591

100

0.449
  rapF Bacillus subtilis subsp. subtilis str. 168

40.633

100

0.41