Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   R3L13_RS08805 Genome accession   NZ_CP137055
Coordinates   1831937..1832755 (-) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii strain SNUBHAB0137     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1826937..1837755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L13_RS08790 (R3L13_08810) pilE 1827154..1827579 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  R3L13_RS08795 (R3L13_08815) pilY2 1827576..1828058 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  R3L13_RS08800 (R3L13_08820) pilY1 1828071..1831925 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  R3L13_RS08805 (R3L13_08825) pilX 1831937..1832755 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  R3L13_RS08810 (R3L13_08830) pilW 1832752..1833753 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  R3L13_RS08815 (R3L13_08835) pilV 1833754..1834314 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  R3L13_RS08820 (R3L13_08840) fimU 1834308..1834781 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  R3L13_RS08825 (R3L13_08845) ispH 1834951..1835901 (-) 951 WP_004742164.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  R3L13_RS08830 (R3L13_08850) gmk 1836024..1836653 (+) 630 WP_000015937.1 guanylate kinase -
  R3L13_RS08835 (R3L13_08855) rpoZ 1836726..1837004 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  R3L13_RS08840 (R3L13_08860) - 1837043..1837173 (+) 131 Protein_1729 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=894415 R3L13_RS08805 WP_000149376.1 1831937..1832755(-) (pilX) [Acinetobacter baumannii strain SNUBHAB0137]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=894415 R3L13_RS08805 WP_000149376.1 1831937..1832755(-) (pilX) [Acinetobacter baumannii strain SNUBHAB0137]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989