Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   R3L13_RS08820 Genome accession   NZ_CP137055
Coordinates   1834308..1834781 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain SNUBHAB0137     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1829308..1839781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L13_RS08805 (R3L13_08825) pilX 1831937..1832755 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  R3L13_RS08810 (R3L13_08830) pilW 1832752..1833753 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  R3L13_RS08815 (R3L13_08835) pilV 1833754..1834314 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  R3L13_RS08820 (R3L13_08840) fimU 1834308..1834781 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  R3L13_RS08825 (R3L13_08845) ispH 1834951..1835901 (-) 951 WP_004742164.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  R3L13_RS08830 (R3L13_08850) gmk 1836024..1836653 (+) 630 WP_000015937.1 guanylate kinase -
  R3L13_RS08835 (R3L13_08855) rpoZ 1836726..1837004 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  R3L13_RS08840 (R3L13_08860) - 1837043..1837173 (+) 131 Protein_1729 hypothetical protein -
  R3L13_RS08845 (R3L13_08865) - 1837213..1839318 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=894418 R3L13_RS08820 WP_001214065.1 1834308..1834781(-) (fimU) [Acinetobacter baumannii strain SNUBHAB0137]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=894418 R3L13_RS08820 WP_001214065.1 1834308..1834781(-) (fimU) [Acinetobacter baumannii strain SNUBHAB0137]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1