Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   AAVD18_RS10955 Genome accession   NZ_CP154893
Coordinates   2081575..2082279 (-) Length   234 a.a.
NCBI ID   WP_013353233.1    Uniprot ID   A0A9P1NIE3
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2076575..2087279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS10940 (AAVD18_10940) pepV 2077589..2078983 (-) 1395 WP_013353230.1 dipeptidase PepV -
  AAVD18_RS10945 (AAVD18_10945) - 2079079..2080383 (+) 1305 WP_013353231.1 NCS2 family permease -
  AAVD18_RS10950 (AAVD18_10950) - 2080418..2081578 (-) 1161 WP_014470836.1 ABC transporter permease -
  AAVD18_RS10955 (AAVD18_10955) pptA 2081575..2082279 (-) 705 WP_013353233.1 ABC transporter ATP-binding protein Regulator
  AAVD18_RS10960 (AAVD18_10960) - 2082560..2082781 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  AAVD18_RS10965 (AAVD18_10965) - 2082910..2083629 (-) 720 WP_014470837.1 pseudouridine synthase -
  AAVD18_RS10970 (AAVD18_10970) - 2083686..2085323 (-) 1638 WP_013353235.1 polysaccharide biosynthesis protein -
  AAVD18_RS10975 (AAVD18_10975) - 2085531..2086796 (+) 1266 WP_013353236.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25859.65 Da        Isoelectric Point: 4.7536

>NTDB_id=894413 AAVD18_RS10955 WP_013353233.1 2081575..2082279(-) (pptA) [Bacillus amyloliquefaciens strain Fad 11/2]
MGDLLNANIVSAGYADRPKVISNVSFTVNSREIAGLIGANGAGKSTVIKAILGLSRDMEGCIEWNDSSYAYIPERPSFYD
ELTLWEHLELTGSLRGIESGAWRERAGRLLDEFSLTAVKHELPSGFSKGMQQKLMLMQAFLAKPDIYIIDEPFIGLDPIS
TKLFTDMLIAEKERGAGILMCTHVLDTAEKICDRFYLLDQGALLLQGALEELQERTGGRSLLDCFYSAVRGSQR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=894413 AAVD18_RS10955 WP_013353233.1 2081575..2082279(-) (pptA) [Bacillus amyloliquefaciens strain Fad 11/2]
TTGGGAGACTTATTGAATGCAAACATTGTATCCGCCGGCTATGCTGACAGGCCGAAGGTGATTTCAAATGTATCTTTTAC
GGTCAATTCGAGAGAAATTGCCGGGTTAATCGGGGCGAACGGCGCGGGAAAAAGTACAGTGATAAAGGCGATTCTCGGGC
TGTCCCGGGATATGGAAGGGTGTATTGAGTGGAATGATTCATCTTATGCTTACATACCGGAGCGGCCGAGTTTTTATGAT
GAACTGACGCTCTGGGAGCATCTCGAGCTGACCGGATCATTACGGGGCATAGAAAGCGGAGCATGGCGTGAGCGGGCCGG
GCGGCTGCTTGATGAATTTTCATTGACGGCGGTAAAACATGAATTGCCTTCCGGTTTTTCAAAAGGGATGCAGCAAAAGC
TGATGCTCATGCAGGCGTTTTTGGCGAAACCGGATATTTACATCATTGATGAACCGTTTATCGGACTTGATCCGATCTCA
ACGAAGCTGTTTACCGACATGCTGATTGCTGAGAAAGAAAGGGGCGCGGGTATTCTGATGTGCACCCACGTTCTGGATAC
TGCCGAAAAAATCTGCGACCGTTTTTATTTGCTGGATCAAGGCGCTCTGCTTCTTCAAGGCGCGTTAGAAGAGCTTCAGG
AAAGAACAGGGGGCCGTTCATTGTTAGATTGCTTTTATTCAGCGGTTCGGGGCAGTCAGCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NIE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

43.568

100

0.449
  pptA Streptococcus thermophilus LMD-9

42.739

100

0.44