Detailed information NTG0894403

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: AAVD18_RS09770
• Genome accession: NZ_CP154893
• Coordinates: 1842363..1842968 (-)
• Length: 201 a.a.
• NCBI ID: WP_003152683.1
• Uniprot ID: A7Z769
• Organism: Bacillus amyloliquefaciens strain Fad 11/2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1837363..1847968

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAVD18_RS09735 (AAVD18_09735)	-	1837374..1838030 (-)	657	WP_013353038.1	DUF421 domain-containing protein	-
AAVD18_RS09740 (AAVD18_09740)	-	1838197..1838583 (+)	387	WP_013353039.1	TIGR04086 family membrane protein	-
AAVD18_RS09745 (AAVD18_09745)	yajC	1838636..1838896 (-)	261	WP_003152695.1	preprotein translocase subunit YajC	-
AAVD18_RS09750 (AAVD18_09750)	tgt	1838928..1840073 (-)	1146	WP_013353040.1	tRNA guanosine(34) transglycosylase Tgt	-
AAVD18_RS09755 (AAVD18_09755)	queA	1840101..1841129 (-)	1029	WP_013353041.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
AAVD18_RS09760 (AAVD18_09760)	-	1841155..1841355 (-)	201	WP_013353042.1	DUF2905 domain-containing protein	-
AAVD18_RS09765 (AAVD18_09765)	ruvB	1841348..1842352 (-)	1005	WP_013353043.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
AAVD18_RS09770 (AAVD18_09770)	ruvA	1842363..1842968 (-)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
AAVD18_RS09775 (AAVD18_09775)	-	1843103..1843579 (-)	477	WP_038463270.1	intercompartmental signaling factor BofC	-
AAVD18_RS09780 (AAVD18_09780)	-	1843990..1844583 (-)	594	WP_014470776.1	YhcN/YlaJ family sporulation lipoprotein	-
AAVD18_RS09785 (AAVD18_09785)	safA	1844732..1845883 (-)	1152	WP_013353047.1	spore coat assembly protein SafA	-
AAVD18_RS09790 (AAVD18_09790)	nadA	1846010..1847113 (-)	1104	WP_061573717.1	quinolinate synthase NadA	-
AAVD18_RS09795 (AAVD18_09795)	nadC	1847113..1847961 (-)	849	WP_013353049.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22414.85 Da
• Isoelectric Point: 5.1597

>NTDB_id=894403 AAVD18_RS09770 WP_003152683.1 1842363..1842968(-) (ruvA) [Bacillus amyloliquefaciens strain Fad 11/2]
MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL
EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=894403 AAVD18_RS09770 WP_003152683.1 1842363..1842968(-) (ruvA) [Bacillus amyloliquefaciens strain Fad 11/2]
GTGATTGAATTCGTGAAGGGGACGATTGATTACGTATCGCCCCAATACATCGTGATTGAAAACGGCGGGATCGGCTATCA
GGTCTTCACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATAAAAGAAGACG
CCTTTTCTTTGTATGGCTTTTCAACCCGGGAAGAAAAAGCGCTTTTCACAAAGCTGCTGAATGTCACCGGCATCGGTCCG
AAAGGGGCGCTCGCCATTCTCGGTTCCGGTGATCCGGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT
GGTGAAATTTCCTGGTGTGGGCAAAAAAACGGCACGGCAGATTATTCTTGATTTGAAAGGCAAACTGGCCGATGTCGTGC
CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGATGAGGCGCTT
GAAGCGCTCAGGGTACTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC
AACAGACCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: A7Z769

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408