Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   R3Y73_RS07570 Genome accession   NZ_CP137015
Coordinates   1524335..1525024 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain CYS06     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1519335..1530024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3Y73_RS07535 (R3Y73_07535) - 1519533..1520015 (-) 483 WP_003151394.1 flagellar protein FlgN -
  R3Y73_RS07540 (R3Y73_07540) flgM 1520030..1520296 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  R3Y73_RS07545 (R3Y73_07545) - 1520366..1520785 (-) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  R3Y73_RS07550 (R3Y73_07550) comFC 1520859..1521548 (-) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  R3Y73_RS07555 (R3Y73_07555) - 1521554..1521838 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  R3Y73_RS07560 (R3Y73_07560) comFA 1521896..1523281 (-) 1386 WP_176283561.1 DEAD/DEAH box helicase Machinery gene
  R3Y73_RS07565 (R3Y73_07565) - 1523389..1524237 (-) 849 WP_003151387.1 DegV family protein -
  R3Y73_RS07570 (R3Y73_07570) degU 1524335..1525024 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  R3Y73_RS07575 (R3Y73_07575) degS 1525101..1526264 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  R3Y73_RS07580 (R3Y73_07580) - 1526487..1527134 (+) 648 WP_060657503.1 YigZ family protein -
  R3Y73_RS07585 (R3Y73_07585) - 1527139..1528314 (+) 1176 WP_176283562.1 LCP family protein -
  R3Y73_RS07590 (R3Y73_07590) - 1528404..1529480 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=894339 R3Y73_RS07570 WP_003219701.1 1524335..1525024(-) (degU) [Bacillus velezensis strain CYS06]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=894339 R3Y73_RS07570 WP_003219701.1 1524335..1525024(-) (degU) [Bacillus velezensis strain CYS06]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1