Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   R3Y73_RS07560 Genome accession   NZ_CP137015
Coordinates   1521896..1523281 (-) Length   461 a.a.
NCBI ID   WP_176283561.1    Uniprot ID   -
Organism   Bacillus velezensis strain CYS06     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1516896..1528281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3Y73_RS07525 (R3Y73_07525) flgL 1517071..1517988 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  R3Y73_RS07530 (R3Y73_07530) flgK 1518000..1519517 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  R3Y73_RS07535 (R3Y73_07535) - 1519533..1520015 (-) 483 WP_003151394.1 flagellar protein FlgN -
  R3Y73_RS07540 (R3Y73_07540) flgM 1520030..1520296 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  R3Y73_RS07545 (R3Y73_07545) - 1520366..1520785 (-) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  R3Y73_RS07550 (R3Y73_07550) comFC 1520859..1521548 (-) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  R3Y73_RS07555 (R3Y73_07555) - 1521554..1521838 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  R3Y73_RS07560 (R3Y73_07560) comFA 1521896..1523281 (-) 1386 WP_176283561.1 DEAD/DEAH box helicase Machinery gene
  R3Y73_RS07565 (R3Y73_07565) - 1523389..1524237 (-) 849 WP_003151387.1 DegV family protein -
  R3Y73_RS07570 (R3Y73_07570) degU 1524335..1525024 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  R3Y73_RS07575 (R3Y73_07575) degS 1525101..1526264 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  R3Y73_RS07580 (R3Y73_07580) - 1526487..1527134 (+) 648 WP_060657503.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52506.97 Da        Isoelectric Point: 10.1460

>NTDB_id=894338 R3Y73_RS07560 WP_176283561.1 1521896..1523281(-) (comFA) [Bacillus velezensis strain CYS06]
MAEGASEFSEVRDFFYGRHLLRAEIPFSDQRINRFIEKEYITAEPSIIRRKNRYICQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=894338 R3Y73_RS07560 WP_176283561.1 1521896..1523281(-) (comFA) [Bacillus velezensis strain CYS06]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGACATTTATTGAGAGCTGAGATACCGTT
TTCAGATCAGCGCATCAACCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACATCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATCACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCGTTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCATCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCTCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGAGTTACCGTACCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629
  comFA Latilactobacillus sakei subsp. sakei 23K

38.182

95.445

0.364