Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   R3Y73_RS05560 Genome accession   NZ_CP137015
Coordinates   1130373..1131017 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain CYS06     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1125373..1136017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3Y73_RS05525 (R3Y73_05525) - 1126558..1126989 (+) 432 WP_077722765.1 Na(+)/H(+) antiporter subunit B -
  R3Y73_RS05530 (R3Y73_05530) - 1126989..1127330 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  R3Y73_RS05535 (R3Y73_05535) - 1127323..1128804 (+) 1482 WP_077722766.1 Na+/H+ antiporter subunit D -
  R3Y73_RS05540 (R3Y73_05540) - 1128810..1129286 (+) 477 WP_077722767.1 Na+/H+ antiporter subunit E -
  R3Y73_RS05545 (R3Y73_05545) - 1129286..1129570 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  R3Y73_RS05550 (R3Y73_05550) mnhG 1129554..1129928 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  R3Y73_RS05555 (R3Y73_05555) - 1129968..1130351 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  R3Y73_RS05560 (R3Y73_05560) comA 1130373..1131017 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  R3Y73_RS05565 (R3Y73_05565) comP 1131098..1133404 (-) 2307 WP_165409405.1 sensor histidine kinase Regulator
  R3Y73_RS05570 (R3Y73_05570) comX 1133423..1133599 (-) 177 WP_044052947.1 competence pheromone ComX -
  R3Y73_RS05575 (R3Y73_05575) - 1133614..1134489 (-) 876 WP_146277410.1 polyprenyl synthetase family protein -
  R3Y73_RS05580 (R3Y73_05580) degQ 1134641..1134781 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  R3Y73_RS05585 (R3Y73_05585) - 1135246..1135587 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=894332 R3Y73_RS05560 WP_003152052.1 1130373..1131017(-) (comA) [Bacillus velezensis strain CYS06]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=894332 R3Y73_RS05560 WP_003152052.1 1130373..1131017(-) (comA) [Bacillus velezensis strain CYS06]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGTAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGTACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864