Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   R1Y13_RS07485 Genome accession   NZ_CP136999
Coordinates   1622009..1624225 (+) Length   738 a.a.
NCBI ID   WP_371040163.1    Uniprot ID   -
Organism   Pseudomonas sp. NY8938     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1617009..1629225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y13_RS07465 (R1Y13_07425) - 1618879..1619502 (+) 624 WP_012271143.1 glutathione S-transferase -
  R1Y13_RS07470 (R1Y13_07430) - 1619636..1620568 (+) 933 WP_012271144.1 ABC transporter ATP-binding protein -
  R1Y13_RS07475 (R1Y13_07435) - 1620565..1621344 (+) 780 WP_012271145.1 ABC transporter permease -
  R1Y13_RS07480 (R1Y13_07440) - 1621228..1621866 (-) 639 WP_012271146.1 DUF2062 domain-containing protein -
  R1Y13_RS07485 (R1Y13_07445) comA 1622009..1624225 (+) 2217 WP_371040163.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  R1Y13_RS07490 (R1Y13_07450) exbB 1624294..1624929 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  R1Y13_RS07495 (R1Y13_07455) - 1624926..1625360 (+) 435 WP_012271149.1 biopolymer transporter ExbD -
  R1Y13_RS07500 (R1Y13_07460) lpxK 1625360..1626361 (+) 1002 WP_012271150.1 tetraacyldisaccharide 4'-kinase -
  R1Y13_RS07505 (R1Y13_07465) - 1626406..1626591 (+) 186 WP_003247142.1 Trm112 family protein -
  R1Y13_RS07510 (R1Y13_07470) kdsB 1626588..1627352 (+) 765 WP_012271151.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  R1Y13_RS07515 (R1Y13_07475) - 1627352..1627816 (+) 465 WP_012271152.1 low molecular weight protein-tyrosine-phosphatase -
  R1Y13_RS07520 (R1Y13_07480) murB 1627813..1628832 (+) 1020 WP_012271153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79896.81 Da        Isoelectric Point: 9.4218

>NTDB_id=894148 R1Y13_RS07485 WP_371040163.1 1622009..1624225(+) (comA) [Pseudomonas sp. NY8938]
MRTGMFALALGLLCLGFLPALPSVGWLLVLAGCAVVSLFTRGWPLGCFLLGFCWACWSAQQALDDRLASGLDGRTLWLEG
RVVGLPTRTAQGVRFELEAARSRRAELPQRLQLSWFEGPTLRAGEQWRLAVTLQRPAGLLNPHRPDREAYLLARRVGATG
TVKAGQLLAPVTGGWRDALRQRLLAVEANGREQALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAVLARWGLWPARLPWLPWACGLAMTAALGYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGAFLPLLLALVAVLLVEPL
AALLPGFWLSFAAVATLIYCFSARLGAWRPWQAWTRAQWVVAIGLLPVLLATGLPVSLTAPLANLVAVPWISLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDWLFRLLALVAQQRPAWVPPALPLWAWLLVCLGALLVLLPRGVPLRALGAVMLLALW
VPREPVPLGQVEVWQLDVGQGLAVLLRTQHHNLLYDAGPARGESDLGERVVLPTLHKLGVASLDLMVISHAHADHAGGAG
AIQRGLPVKRVVGGEALEHFELQPCVSGEQWEWDGVRFSLWHWADGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AATEVPGIDWLQAPHHGSRSSSTEAFIRATAPRGVLVSRGRNNSFGHPHAQVVERYRRHGAVMHDTAVEGALRVVLGRHG
EAEGVRVQRRFWREVAIP

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=894148 R1Y13_RS07485 WP_371040163.1 1622009..1624225(+) (comA) [Pseudomonas sp. NY8938]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTTTTGTGCCTGGGCTTTCTCCCCGCGTTGCCATCGGTCGGATGGCT
GCTGGTGCTGGCCGGCTGCGCTGTCGTCAGCCTGTTTACCCGGGGTTGGCCGTTGGGCTGTTTTCTCCTGGGCTTCTGTT
GGGCTTGCTGGTCTGCGCAGCAGGCGCTCGATGATCGCCTGGCTAGCGGTCTGGATGGCCGCACCCTGTGGCTGGAAGGG
CGGGTGGTTGGTTTGCCGACCCGAACAGCACAAGGCGTGCGTTTCGAGTTGGAGGCGGCACGCTCGCGGCGGGCCGAACT
GCCGCAGCGCCTGCAATTGAGCTGGTTCGAAGGGCCGACACTGAGGGCGGGCGAGCAGTGGCGGCTGGCCGTGACCTTGC
AGCGTCCGGCTGGGTTGCTCAATCCGCATCGGCCGGACCGGGAGGCCTATTTGCTGGCGCGGCGAGTGGGCGCCACGGGC
ACGGTCAAGGCGGGGCAGCTGCTGGCTCCCGTGACCGGTGGCTGGCGCGATGCGCTGCGTCAGCGCTTGCTTGCGGTCGA
GGCCAATGGTCGTGAGCAAGCGTTGGTGGCGTTGGTGCTGGGCGATGGAGCGGGCCTGGCCAGGGAGGACTGGCAGACAT
TGCAGGCCACCGGCACGGTGCACCTGTTGGTAATTTCTGGCCAGCATATCGGCCTGGTCGCCGGTTTGCTCTACGGCCTG
GTTGCCGTGCTGGCGCGTTGGGGGCTGTGGCCGGCACGGCTGCCATGGCTACCCTGGGCCTGCGGTCTGGCCATGACCGC
GGCGCTGGGCTACGGCTGGTTGGCCGGCGGCGGTGTGCCCGTGCAGCGCGCCTGCCTGATGCTGGCTGTGGTGTTGCTCT
GGCGCCTGCGCTTTCGCCACCTTGGGGCTTTTTTACCCTTGTTGCTGGCGCTCGTTGCGGTGTTGCTGGTTGAGCCGCTG
GCGGCGCTGCTTCCTGGGTTCTGGCTGTCGTTTGCTGCCGTGGCCACGCTGATCTATTGCTTCAGTGCTCGCTTGGGCGC
TTGGCGGCCCTGGCAGGCTTGGACGCGTGCGCAATGGGTTGTTGCCATCGGCTTGCTACCGGTACTGCTGGCTACAGGCT
TGCCGGTAAGCCTGACTGCACCGCTGGCCAACCTTGTGGCAGTGCCGTGGATCAGCCTGGCGGTTTTGCCGTTGGCGTTG
CTGGGTACGTTGTTGCTGCCGCTGGGCGGCGTAGGGGAGGCGCTGTTGTGGCTGGCGGGCGGCTTGCTGGATTGGCTGTT
CCGGCTGCTGGCACTGGTGGCGCAGCAGCGCCCGGCATGGGTGCCGCCGGCCTTGCCACTGTGGGCCTGGCTGTTGGTCT
GTCTGGGTGCGTTGTTGGTTTTGCTACCCCGCGGTGTGCCGCTGCGCGCGTTGGGAGCGGTGATGCTGCTGGCGCTGTGG
GTGCCCAGGGAGCCGGTGCCGCTCGGGCAAGTCGAGGTCTGGCAGCTGGACGTTGGCCAGGGGCTGGCGGTGCTGTTGCG
TACCCAGCATCACAACCTGTTGTATGACGCCGGGCCGGCCAGGGGCGAAAGTGACCTGGGGGAGCGGGTGGTACTGCCGA
CTTTGCATAAGCTGGGGGTGGCCAGCCTAGACCTGATGGTGATCAGCCATGCGCATGCCGACCATGCGGGTGGGGCGGGG
GCCATTCAGCGGGGTTTGCCGGTCAAGCGGGTTGTCGGTGGTGAAGCGCTGGAACACTTTGAGCTGCAGCCTTGTGTGAG
TGGTGAACAGTGGGAATGGGACGGCGTGCGCTTTTCGCTGTGGCACTGGGCTGATGGGCAGAGCAGCAACGACCGCTCCT
GCGTGCTGCTGGTCGAGGCCCAGGGCGAGCGATTGTTGTTGGCTGGTGATATGGAGGCTGGCGCCGAACGGGCCTGGCTG
GCAGCCACTGAAGTGCCCGGAATCGACTGGCTGCAGGCTCCGCACCATGGCAGCCGCAGTTCGTCCACCGAGGCGTTCAT
CCGTGCTACCGCACCGCGTGGGGTTTTGGTTTCGCGTGGGCGCAACAACAGCTTCGGGCACCCGCATGCGCAGGTCGTGG
AGCGGTATCGGCGGCACGGGGCGGTGATGCATGACACGGCGGTGGAGGGGGCGTTGCGGGTGGTGCTGGGGCGGCACGGG
GAAGCGGAAGGTGTGCGGGTGCAGCGGCGATTCTGGCGTGAGGTCGCAATTCCCTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.249

97.425

0.577
  comA Ralstonia pseudosolanacearum GMI1000

36.883

100

0.385