Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   R1Y13_RS07490 Genome accession   NZ_CP136999
Coordinates   1624294..1624929 (+) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas sp. NY8938     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1619294..1629929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y13_RS07470 (R1Y13_07430) - 1619636..1620568 (+) 933 WP_012271144.1 ABC transporter ATP-binding protein -
  R1Y13_RS07475 (R1Y13_07435) - 1620565..1621344 (+) 780 WP_012271145.1 ABC transporter permease -
  R1Y13_RS07480 (R1Y13_07440) - 1621228..1621866 (-) 639 WP_012271146.1 DUF2062 domain-containing protein -
  R1Y13_RS07485 (R1Y13_07445) comA 1622009..1624225 (+) 2217 WP_371040163.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  R1Y13_RS07490 (R1Y13_07450) exbB 1624294..1624929 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  R1Y13_RS07495 (R1Y13_07455) - 1624926..1625360 (+) 435 WP_012271149.1 biopolymer transporter ExbD -
  R1Y13_RS07500 (R1Y13_07460) lpxK 1625360..1626361 (+) 1002 WP_012271150.1 tetraacyldisaccharide 4'-kinase -
  R1Y13_RS07505 (R1Y13_07465) - 1626406..1626591 (+) 186 WP_003247142.1 Trm112 family protein -
  R1Y13_RS07510 (R1Y13_07470) kdsB 1626588..1627352 (+) 765 WP_012271151.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  R1Y13_RS07515 (R1Y13_07475) - 1627352..1627816 (+) 465 WP_012271152.1 low molecular weight protein-tyrosine-phosphatase -
  R1Y13_RS07520 (R1Y13_07480) murB 1627813..1628832 (+) 1020 WP_012271153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=894149 R1Y13_RS07490 WP_016391244.1 1624294..1624929(+) (exbB) [Pseudomonas sp. NY8938]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=894149 R1Y13_RS07490 WP_016391244.1 1624294..1624929(+) (exbB) [Pseudomonas sp. NY8938]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAAGCCTTGCGCGCCGATTCGCCACTGGGCGAAATCCTTGCTGCGGGCCTGGCCAAC
TCGCGCCATGGTCGTGAAATCATGAAAGAGTGCATCGAGGAAGCCGCTTCGCGTGTCATCCACGAACTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCTGCCATGGCTCCGTTGCTGGGCCTGCTGGGCACCGTACTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTTACCACGGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTATTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAACAAGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829