Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCU34_RS12005 Genome accession   NZ_AP024911
Coordinates   2577348..2577980 (+) Length   210 a.a.
NCBI ID   WP_077314098.1    Uniprot ID   -
Organism   Vibrio zhugei strain KCTC 62784     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2572348..2582980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU34_RS11980 - 2572459..2574384 (+) 1926 WP_123016995.1 ABC transporter ATP-binding protein -
  OCU34_RS11985 - 2574384..2574863 (+) 480 WP_123016996.1 TIGR02444 family protein -
  OCU34_RS11990 - 2574882..2575892 (+) 1011 WP_123016997.1 hydrolase -
  OCU34_RS11995 - 2575930..2576136 (+) 207 WP_123016998.1 YheU family protein -
  OCU34_RS12000 - 2576234..2577103 (+) 870 WP_123016999.1 phosphoribulokinase -
  OCU34_RS12005 crp 2577348..2577980 (+) 633 WP_077314098.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCU34_RS12010 - 2578050..2578847 (-) 798 WP_123017000.1 DUF1338 domain-containing protein -
  OCU34_RS12015 astD 2578874..2580331 (-) 1458 WP_123017001.1 succinylglutamate-semialdehyde dehydrogenase -
  OCU34_RS12020 astA 2580360..2581379 (-) 1020 WP_123017002.1 arginine N-succinyltransferase -
  OCU34_RS12025 - 2581478..2582689 (-) 1212 WP_123017003.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23524.30 Da        Isoelectric Point: 7.8387

>NTDB_id=89411 OCU34_RS12005 WP_077314098.1 2577348..2577980(+) (crp) [Vibrio zhugei strain KCTC 62784]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=89411 OCU34_RS12005 WP_077314098.1 2577348..2577980(+) (crp) [Vibrio zhugei strain KCTC 62784]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACTTTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCTTCTAA
AAGCACGTTAATTCATGCGGGTGAGAAGGCTGAAACTCTTTACTACATTGTAAAAGGTTCAGTGGCGGTATTGATTAAAG
ATGAAGAAGGCAAGGAAATGATCCTTTCCTACTTAAACCAAGGTGACTTTATTGGTGAGCTTGGTCTCTTTGAGGAAGGA
CAAGAACGTACCGCTTGGGTTCGTGCTAAGTCACCTTGTGAAGTGGCTGAAATTTCATTTAAGAAATTCCGTCAGTTAAT
TCAGGTTAACCCTGACATTCTGATGCGTCTATCTGGGCAAATGGCAAGTCGTCTTCAAGTCACCAGTCAGAAAGTGGGCG
ATCTCGCTTTCCTAGACGTGACCGGTCGTATTGCGCAAACGCTACTTAACCTAGCAAAACAACCTGATGCAATGACGCAC
CCAGACGGAATGCAAATCAAGATTACACGCCAAGAGATCGGTCAGATCGTCGGGTGTTCTCGCGAAACAGTGGGCCGTAT
ACTAAAAATGCTAGAAGAGCAGAACTTGATTTCTGCCCACGGTAAAACCATTGTTGTGTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.571

100

0.986
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment