Detailed information NTG0089395

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OCU34_RS02550
• Genome accession: NZ_AP024911
• Coordinates: 532370..533344 (+)
• Length: 324 a.a.
• NCBI ID: WP_123015387.1
• Uniprot ID: -
• Organism: Vibrio zhugei strain KCTC 62784
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 527370..538344

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU34_RS02515	ftsB	527467..527760 (+)	294	WP_123015381.1	cell division protein FtsB	-
OCU34_RS02520	ispD	527760..528458 (+)	699	WP_123017293.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OCU34_RS02525	ispF	528455..528931 (+)	477	WP_123015382.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OCU34_RS02530	truD	528953..529999 (+)	1047	WP_123015383.1	tRNA pseudouridine(13) synthase TruD	-
OCU34_RS02535	surE	529992..530747 (+)	756	WP_123015384.1	5'/3'-nucleotidase SurE	-
OCU34_RS02540	-	530753..531379 (+)	627	WP_123015385.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OCU34_RS02545	-	531379..532296 (+)	918	WP_123015386.1	peptidoglycan DD-metalloendopeptidase family protein	-
OCU34_RS02550	rpoS	532370..533344 (+)	975	WP_123015387.1	RNA polymerase sigma factor RpoS	Regulator
OCU34_RS02555	mutS	533421..535982 (-)	2562	WP_123015388.1	DNA mismatch repair protein MutS	-
OCU34_RS02560	pncC	536067..536561 (+)	495	WP_123017294.1	nicotinamide-nucleotide amidase	-
OCU34_RS02565	recA	536711..537754 (+)	1044	WP_123017295.1	recombinase RecA	Machinery gene
OCU34_RS02570	recX	537826..538287 (+)	462	WP_123015389.1	recombination regulator RecX	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37027.92 Da
• Isoelectric Point: 4.8747

>NTDB_id=89395 OCU34_RS02550 WP_123015387.1 532370..533344(+) (rpoS) [Vibrio zhugei strain KCTC 62784]
MSISNTATKVEEFEFDATQYDVTDSSSTKKTANAQDDFEVSSKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGCDTA
RKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIH
VVKELNIYLRTARELSQRLDHEPTAEEIAQELDKPVEDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDGHHSDPEVST
QDNDIKASLVNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILVKQGLSMEALFNV
EAEF

Nucleotide

• Length: 975 bp

>NTDB_id=89395 OCU34_RS02550 WP_123015387.1 532370..533344(+) (rpoS) [Vibrio zhugei strain KCTC 62784]
ATGAGTATTAGTAACACTGCTACAAAAGTAGAAGAATTTGAATTCGACGCAACGCAATACGATGTGACAGATTCAAGTTC
AACCAAAAAAACGGCCAATGCTCAAGATGACTTTGAAGTCTCATCAAAAAGTTTAGATGCGACTCAAATGTACTTAAGCG
AAATTGGTTTCTCACCACTATTAACAGCAGAAGAAGAAGTGTTATATGCTCGACGTGCGTTACGTGGTTGCGATACTGCG
CGCAAACGTATGATCGAAAGTAATTTACGCTTAGTTGTTAAAATCTCTCGTCGTTATGGCAACCGCGGTTTGGCGCTTCT
TGATTTAATTGAAGAAGGCAACCTTGGTTTGATTCGTGCGGTCGAGAAATTCGACCCAGAACGTGGATTCCGTTTTTCCA
CCTACGCGACGTGGTGGATTCGCCAAACGATTGAGCGTGCGCTAATGAACCAAACACGAACCATTCGTTTACCGATTCAT
GTTGTTAAAGAATTGAATATTTATTTACGGACTGCACGTGAACTTTCACAACGTTTAGACCATGAACCTACCGCTGAAGA
AATCGCTCAAGAGCTGGATAAGCCTGTTGAAGATGTCAGTAAAATGCTCCGTCTGAATGAGCGTATCAGTTCTGTGGATA
CACCGATTGGCGGTGATGGTGATAAAGCGTTGTTGGATATCATTCCTGATGGTCATCATTCTGATCCCGAAGTTTCGACC
CAAGATAATGATATTAAAGCATCATTAGTCAACTGGTTAGATGAACTGAATCCAAAACAAAAAGAAGTGCTTGCTCGTCG
TTTTGGATTGTTGGGTTACGAACCGTCAACGTTGGAAGAAGTTGGACGTGAAATCAGCCTGACTCGTGAACGTGTTCGTC
AGATTCAAGTGGAAGGGCTACGGCGTCTGCGCGAAATCTTGGTCAAACAAGGGTTGAGCATGGAAGCACTCTTTAACGTT
GAAGCTGAATTCTAG

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (164-237)

• Sigma-70 region 2 (Sigma70_r2) (84-153)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (46-76)

• Sigma-70, region 4 (Sigma70_r4) (252-305)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.434	100	0.855