Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCU60_RS15640 Genome accession   NZ_AP024907
Coordinates   3483846..3484493 (-) Length   215 a.a.
NCBI ID   WP_074371510.1    Uniprot ID   -
Organism   Vibrio spartinae strain CECT 9026     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3478846..3489493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU60_RS15630 uvrA 3479880..3482702 (-) 2823 WP_074371508.1 excinuclease ABC subunit UvrA -
  OCU60_RS15635 galU 3482841..3483728 (-) 888 WP_074371509.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCU60_RS15640 qstR 3483846..3484493 (-) 648 WP_074371510.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCU60_RS15645 ssb 3484766..3485305 (+) 540 WP_074371511.1 single-stranded DNA-binding protein Machinery gene
  OCU60_RS15650 metH 3485397..3489071 (-) 3675 WP_074371512.1 methionine synthase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25238.31 Da        Isoelectric Point: 9.6063

>NTDB_id=89382 OCU60_RS15640 WP_074371510.1 3483846..3484493(-) (qstR) [Vibrio spartinae strain CECT 9026]
MKRSNYSRVLYVLYPDNQEPSMFYHEIEVALGQILPKIQPRQFMLSHQTDRHKILLFDYQQKEVLLSRLNMENALDLCLE
TVVVNVEKRLRTEELLQLGNLKGLFYRSDPLELIIAALREIREGQIYLPRHICSQLLHYYRHLFNNKNVSAAISLTSREL
EILRCLKTGASNTQIADNLFISEFTVKSHLYQIFKKISVKNRTQATTWAKQNLVS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=89382 OCU60_RS15640 WP_074371510.1 3483846..3484493(-) (qstR) [Vibrio spartinae strain CECT 9026]
ATGAAAAGATCAAATTACAGCAGAGTGCTTTATGTCCTCTACCCCGATAATCAAGAACCTTCAATGTTCTATCATGAAAT
CGAGGTCGCACTAGGACAGATACTTCCCAAAATTCAACCGCGGCAATTCATGCTGTCCCATCAGACAGATCGGCACAAAA
TACTCCTGTTTGATTATCAACAGAAAGAAGTATTGCTATCCCGTTTGAATATGGAGAACGCACTGGATTTATGTCTCGAA
ACCGTGGTTGTCAATGTTGAGAAACGCCTGAGAACAGAAGAACTTCTCCAGCTAGGTAATTTGAAAGGGCTGTTTTATCG
CAGTGATCCGCTTGAACTGATTATCGCTGCGCTGCGCGAAATCAGAGAAGGGCAAATTTATTTACCGCGACATATTTGTA
GTCAGCTGCTCCATTACTATCGACATCTATTTAATAATAAAAACGTCAGCGCAGCGATATCTCTGACCTCCAGAGAGTTG
GAAATCCTGCGCTGTCTGAAAACGGGGGCATCAAATACACAAATTGCAGATAATCTGTTTATCAGCGAATTCACGGTCAA
GTCACATCTGTATCAGATCTTTAAAAAAATCTCGGTGAAAAACCGCACTCAAGCCACAACATGGGCAAAACAAAATCTAG
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

50.691

100

0.512
  qstR Vibrio campbellii strain DS40M4

48.148

100

0.484
  qstR Vibrio parahaemolyticus RIMD 2210633

46.512

100

0.465

Multiple sequence alignment