Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   CYJ98_RS10285 Genome accession   NZ_CP136962
Coordinates   2178754..2179248 (+) Length   164 a.a.
NCBI ID   WP_199903543.1    Uniprot ID   -
Organism   Neisseria perflava strain UMB0023     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2173754..2184248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS10280 (CYJ98_010280) comE 2178284..2178571 (+) 288 WP_004520163.1 ComEA family DNA-binding protein Machinery gene
  CYJ98_RS10285 (CYJ98_010285) comP 2178754..2179248 (+) 495 WP_199903543.1 type IV pilin protein Machinery gene
  CYJ98_RS10290 (CYJ98_010290) uvrB 2179464..2181491 (+) 2028 WP_101756426.1 excinuclease ABC subunit UvrB -
  CYJ98_RS10295 (CYJ98_010295) - 2181841..2182986 (+) 1146 WP_101756427.1 hypothetical protein -
  CYJ98_RS10300 (CYJ98_010300) - 2183035..2183298 (+) 264 WP_049332348.1 PAAR domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18032.10 Da        Isoelectric Point: 10.1982

>NTDB_id=893807 CYJ98_RS10285 WP_199903543.1 2178754..2179248(+) (comP) [Neisseria perflava strain UMB0023]
MYLKTFVGKRNGATVQRGYSLIQLLVVILLVSILATAAFTAYRESVRSANLRAAHAALLENARFMEQFYTKKGSFKLTST
KWPELPVKEAGGFCIRMSGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKSKGSCTDGEEIFRGNDAECK
PFMG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=893807 CYJ98_RS10285 WP_199903543.1 2178754..2179248(+) (comP) [Neisseria perflava strain UMB0023]
ATGTACTTAAAAACATTTGTTGGCAAACGGAATGGAGCAACTGTGCAGAGGGGGTACTCTTTGATACAGCTGTTGGTGGT
GATACTGCTGGTTTCGATCTTGGCAACGGCGGCCTTTACGGCCTATCGGGAGTCAGTCCGCTCGGCCAACTTGCGTGCGG
CTCATGCCGCCCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTACACAAAAAAGGGCAGCTTTAAGCTGACGTCGACG
AAGTGGCCGGAATTGCCGGTGAAGGAGGCGGGCGGTTTCTGTATCAGGATGAGCGGTCAGGCTAAGGGCATCCTGGAGGG
TAAGTTTACCTTGAAGGCGGTGGCGTTGGACAGGGAGGCGGAACCGAGGGTATTGCGTTTGAACGAGTCGTTGACAGCAG
TAGTGTGCGGGAAGATGAAGAGTAAGGGAAGCTGTACGGACGGCGAGGAGATATTTAGGGGCAATGATGCGGAGTGTAAG
CCTTTTATGGGGTGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(41-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

92.683

100

0.927
  comP Neisseria meningitidis 8013

51.007

90.854

0.463
  comP Neisseria gonorrhoeae MS11

51.02

89.634

0.457