Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   CYJ98_RS07540 Genome accession   NZ_CP136962
Coordinates   1634776..1635663 (+) Length   295 a.a.
NCBI ID   WP_101756017.1    Uniprot ID   A0AAW6Y6A1
Organism   Neisseria perflava strain UMB0023     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1629776..1640663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS07530 (CYJ98_007530) pilF 1631774..1633453 (+) 1680 WP_101756015.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CYJ98_RS07535 (CYJ98_007535) pilG 1633533..1634774 (+) 1242 WP_101756016.1 type II secretion system F family protein Machinery gene
  CYJ98_RS07540 (CYJ98_007540) pilD 1634776..1635663 (+) 888 WP_101756017.1 prepilin peptidase Machinery gene
  CYJ98_RS07545 (CYJ98_007545) coaE 1635663..1636283 (+) 621 WP_101756018.1 dephospho-CoA kinase -
  CYJ98_RS07550 (CYJ98_007550) yacG 1636280..1636462 (+) 183 WP_003682475.1 DNA gyrase inhibitor YacG -
  CYJ98_RS07555 (CYJ98_007555) glyQ 1636544..1637443 (+) 900 WP_101756019.1 glycine--tRNA ligase subunit alpha -
  CYJ98_RS07560 (CYJ98_007560) lspA 1637592..1638098 (+) 507 WP_167382871.1 signal peptidase II -
  CYJ98_RS07565 (CYJ98_007565) ispH 1638112..1639080 (+) 969 WP_101756021.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  CYJ98_RS07570 (CYJ98_007570) ftsZ 1639200..1640399 (-) 1200 WP_003682480.1 cell division protein FtsZ -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32244.42 Da        Isoelectric Point: 8.3156

>NTDB_id=893796 CYJ98_RS07540 WP_101756017.1 1634776..1635663(+) (pilD) [Neisseria perflava strain UMB0023]
MLDSIYSAIDALSVLAPFAIPLAVILGLLIGSFLNVVIYRTPIMMEREWTQFSKEHLGIELTDEEKQPFNLRKPDSRCPK
CKSPVKLWQNIPILSYVFLGGKCHSCKTAIGIRYPLIELLTGVLFGIVAWQYGWSWANIGGFILTAILIALTFIDADTQY
LPDSLTQPLIWIGLLFNLNDTFVPLHSAVLGAIAGYMSLYTLCAVYKLLTGKIGMGNGDFKLLAALGAWLGVGILPVLIF
IAALVGLVGALIARVGKGQYFAFGPSLAVAGWIILVANAPITQLVQWWLVQSGFR

Nucleotide


Download         Length: 888 bp        

>NTDB_id=893796 CYJ98_RS07540 WP_101756017.1 1634776..1635663(+) (pilD) [Neisseria perflava strain UMB0023]
ATGCTTGATAGTATTTACTCTGCCATCGACGCCCTCTCCGTTCTTGCGCCATTCGCTATTCCTTTAGCCGTTATTTTGGG
ATTGCTGATTGGCAGCTTTCTGAACGTTGTTATTTATCGCACGCCGATAATGATGGAACGCGAATGGACACAATTTTCCA
AAGAGCATTTGGGTATCGAGCTGACAGACGAAGAAAAACAGCCATTTAATCTGCGTAAACCGGATTCACGCTGCCCCAAA
TGCAAAAGCCCAGTCAAACTTTGGCAAAACATCCCCATCCTCAGCTATGTTTTCCTGGGCGGGAAATGCCACTCCTGCAA
AACCGCTATCGGCATACGCTATCCGCTGATTGAGCTGCTGACAGGTGTCTTATTCGGTATTGTCGCATGGCAATACGGCT
GGTCATGGGCAAATATTGGCGGATTCATTCTGACTGCCATATTGATTGCGCTGACCTTTATCGATGCCGATACTCAATAT
TTACCCGACAGCCTGACTCAGCCCCTAATTTGGATCGGCCTGCTGTTTAATCTGAATGATACATTCGTACCCCTGCATTC
AGCCGTTTTAGGCGCAATCGCAGGCTATATGAGCCTTTATACTTTATGCGCCGTCTATAAACTTCTGACCGGTAAAATCG
GCATGGGCAATGGCGACTTCAAACTTTTGGCCGCGCTCGGTGCATGGCTGGGCGTAGGTATCTTGCCTGTTCTGATCTTC
ATAGCTGCCTTGGTCGGACTGGTGGGCGCACTCATTGCCCGCGTCGGCAAAGGCCAATATTTTGCTTTTGGTCCCAGCCT
TGCTGTGGCAGGATGGATTATTTTGGTTGCCAATGCACCTATTACCCAACTGGTACAATGGTGGCTCGTACAATCAGGAT
TCCGATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(143-249)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

70.318

95.932

0.675
  pilD Vibrio campbellii strain DS40M4

44

93.22

0.41
  pilD Vibrio cholerae strain A1552

46.154

88.136

0.407
  pilD Acinetobacter baumannii D1279779

45.418

85.085

0.386
  pilD Acinetobacter nosocomialis M2

45.418

85.085

0.386