Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   CYJ98_RS01065 Genome accession   NZ_CP136962
Coordinates   234678..234965 (+) Length   95 a.a.
NCBI ID   WP_004520163.1    Uniprot ID   A0AAF1BTY2
Organism   Neisseria perflava strain UMB0023     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 229678..239965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS01065 (CYJ98_001065) comE 234678..234965 (+) 288 WP_004520163.1 ComEA family DNA-binding protein Machinery gene
  CYJ98_RS01070 (CYJ98_001070) hpnD 235399..236247 (+) 849 WP_101756104.1 presqualene diphosphate synthase HpnD -
  CYJ98_RS01075 (CYJ98_001075) hpnE 236244..237551 (+) 1308 WP_101756105.1 hydroxysqualene dehydroxylase HpnE -
  CYJ98_RS01080 (CYJ98_001080) - 237647..238366 (+) 720 WP_003747583.1 SDR family oxidoreductase -
  CYJ98_RS01085 (CYJ98_001085) thiL 238554..239510 (+) 957 WP_101756106.1 thiamine-phosphate kinase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9791.48 Da        Isoelectric Point: 10.4923

>NTDB_id=893769 CYJ98_RS01065 WP_004520163.1 234678..234965(+) (comE) [Neisseria perflava strain UMB0023]
MKKFLFGVFAAVCTAFSLAAVNVNTASSAELEALPGIGPAKAKAIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=893769 CYJ98_RS01065 WP_004520163.1 234678..234965(+) (comE) [Neisseria perflava strain UMB0023]
ATGAAGAAATTTTTATTTGGTGTCTTTGCCGCCGTGTGTACGGCATTCTCTTTGGCTGCCGTGAATGTCAATACGGCCTC
TTCTGCCGAGCTGGAGGCATTGCCGGGTATCGGCCCGGCTAAGGCGAAAGCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCTGCACAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.878

86.316

0.474