Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCU60_RS01680 Genome accession   NZ_AP024907
Coordinates   394562..395194 (-) Length   210 a.a.
NCBI ID   WP_038179153.1    Uniprot ID   -
Organism   Vibrio spartinae strain CECT 9026     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 389562..400194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU60_RS01660 - 390427..391005 (+) 579 WP_074372156.1 aminodeoxychorismate/anthranilate synthase component II -
  OCU60_RS01665 - 391271..392482 (+) 1212 WP_074372155.1 aspartate aminotransferase family protein -
  OCU60_RS01670 astA 392576..393598 (+) 1023 WP_074372154.1 arginine N-succinyltransferase -
  OCU60_RS01675 - 393663..394487 (+) 825 WP_074372153.1 DUF1338 domain-containing protein -
  OCU60_RS01680 crp 394562..395194 (-) 633 WP_038179153.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCU60_RS01685 - 395479..396348 (-) 870 WP_074372152.1 phosphoribulokinase -
  OCU60_RS01690 - 396442..396654 (-) 213 WP_074372151.1 YheU family protein -
  OCU60_RS01695 - 396813..397829 (-) 1017 WP_074372150.1 hydrolase -
  OCU60_RS01700 - 397838..398326 (-) 489 WP_074372149.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23508.30 Da        Isoelectric Point: 7.8387

>NTDB_id=89364 OCU60_RS01680 WP_038179153.1 394562..395194(-) (crp) [Vibrio spartinae strain CECT 9026]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLAGQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=89364 OCU60_RS01680 WP_038179153.1 394562..395194(-) (crp) [Vibrio spartinae strain CECT 9026]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTTCTTTCACATTGTCACATACATAAATACCCTTCAAA
GAGTACGCTGATTCATGCAGGCGAAAAAGCGGAAACGCTTTATTACATCGTGAAGGGATCTGTTGCAGTTCTGATCAAGG
ATGAAGAAGGAAAAGAGATGATCCTTTCCTATCTCAATCAGGGTGACTTCATCGGTGAACTTGGTTTATTCGAAGAAGGT
CAAGAGCGGACTGCTTGGGTCAGAGCGAAATCTCCCTGCGAAGTTGCAGAAATTTCCTTCAAAAAATTCCGTCAGTTAAT
TCAGGTTAACCCAGACATTTTAATGCGTTTGGCAGGACAGATGGCAAGCCGCCTTCAAGTCACCAGCCAAAAAGTCGGTG
ATCTGGCTTTTCTGGATGTGACTGGTCGTATTGCCCAGACGCTGTTAAATCTGGCAAAACAACCCGATGCAATGACGCAT
CCAGACGGAATGCAAATCAAGATTACTCGTCAGGAGATCGGCCAGATTGTCGGCTGTTCTCGTGAAACCGTTGGTCGCAT
TTTGAAAATGCTTGAAGAGCAGAACCTTATTTCAGCCCACGGAAAAACAATCGTTGTTTACGGTACAAGATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment