Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AAH980_RS09970 Genome accession   NZ_CP154856
Coordinates   2119228..2119863 (+) Length   211 a.a.
NCBI ID   WP_004884597.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain Ab25     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2114228..2124863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH980_RS09955 (AAH980_09955) adeT2 2115289..2116275 (-) 987 WP_148356640.1 putative multidrug efflux protein AdeT2 -
  AAH980_RS09960 (AAH980_09960) - 2116354..2117169 (-) 816 WP_006580703.1 NAD(P)H-binding protein -
  AAH980_RS09965 (AAH980_09965) recG 2117190..2119235 (+) 2046 WP_284081102.1 ATP-dependent DNA helicase RecG Machinery gene
  AAH980_RS09970 (AAH980_09970) comF 2119228..2119863 (+) 636 WP_004884597.1 phosphoribosyltransferase family protein Machinery gene
  AAH980_RS09975 (AAH980_09975) - 2119866..2120267 (-) 402 WP_004884602.1 NUDIX domain-containing protein -
  AAH980_RS09980 (AAH980_09980) - 2120282..2120863 (-) 582 WP_002049746.1 TIGR00730 family Rossman fold protein -
  AAH980_RS09985 (AAH980_09985) - 2121021..2122034 (+) 1014 WP_002049699.1 CorA family divalent cation transporter -
  AAH980_RS09990 (AAH980_09990) - 2122107..2122394 (-) 288 WP_000250997.1 STAS domain-containing protein -
  AAH980_RS09995 (AAH980_09995) - 2122406..2123047 (-) 642 WP_002049753.1 ABC transporter substrate-binding protein -
  AAH980_RS10000 (AAH980_10000) - 2123074..2123757 (-) 684 WP_002049738.1 outer membrane lipid asymmetry maintenance protein MlaD -
  AAH980_RS10005 (AAH980_10005) mlaE 2123757..2124533 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24642.88 Da        Isoelectric Point: 9.9089

>NTDB_id=893613 AAH980_RS09970 WP_004884597.1 2119228..2119863(+) (comF) [Acinetobacter nosocomialis strain Ab25]
MFKLFNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTVQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQIKFPKIQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLKIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAM
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=893613 AAH980_RS09970 WP_004884597.1 2119228..2119863(+) (comF) [Acinetobacter nosocomialis strain Ab25]
ATGTTTAAGTTGTTCAACCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTATTATGTGAAATAGGAACACGGGAAAA
ATATTCACTTTGTAAAGAATGTTGGGAACAACTACCGTGGCTTAAGCAAACAGTTCAGCGCAATGATCAATCTGTTCTTG
TGGCTTGCCACTACGCATATCCAATTAATCGCATAATTCAGCAGTTCAAATATGAACAAAAATTACACTATCAAACCTTA
CTTGCCGAAGTCTTACAGCAAATAAAATTTCCTAAGATACAAGCCATAGTACCTATGCCTATTTCTAAACAACGCTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAAACTTTTAAGTAAACAATTAAAAATACCTGTTTGGCAGCCTGTGC
AGCGCCTAAATGAACGCTCTCAAAAAGGATTGTCTCGCCTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGATG
ACTCAAGAAAAACGGCGTTACCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCACTAAAACAGCTAGGGTGCACATCTATTTATGCAAGTTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

95.735

100

0.957
  comF Acinetobacter baumannii D1279779

94.787

100

0.948