Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   AAH980_RS09965 Genome accession   NZ_CP154856
Coordinates   2117190..2119235 (+) Length   681 a.a.
NCBI ID   WP_284081102.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain Ab25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2112190..2124235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH980_RS09950 (AAH980_09950) plsB 2112673..2115246 (+) 2574 WP_284081101.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  AAH980_RS09955 (AAH980_09955) adeT2 2115289..2116275 (-) 987 WP_148356640.1 putative multidrug efflux protein AdeT2 -
  AAH980_RS09960 (AAH980_09960) - 2116354..2117169 (-) 816 WP_006580703.1 NAD(P)H-binding protein -
  AAH980_RS09965 (AAH980_09965) recG 2117190..2119235 (+) 2046 WP_284081102.1 ATP-dependent DNA helicase RecG Machinery gene
  AAH980_RS09970 (AAH980_09970) comF 2119228..2119863 (+) 636 WP_004884597.1 phosphoribosyltransferase family protein Machinery gene
  AAH980_RS09975 (AAH980_09975) - 2119866..2120267 (-) 402 WP_004884602.1 NUDIX domain-containing protein -
  AAH980_RS09980 (AAH980_09980) - 2120282..2120863 (-) 582 WP_002049746.1 TIGR00730 family Rossman fold protein -
  AAH980_RS09985 (AAH980_09985) - 2121021..2122034 (+) 1014 WP_002049699.1 CorA family divalent cation transporter -
  AAH980_RS09990 (AAH980_09990) - 2122107..2122394 (-) 288 WP_000250997.1 STAS domain-containing protein -
  AAH980_RS09995 (AAH980_09995) - 2122406..2123047 (-) 642 WP_002049753.1 ABC transporter substrate-binding protein -
  AAH980_RS10000 (AAH980_10000) - 2123074..2123757 (-) 684 WP_002049738.1 outer membrane lipid asymmetry maintenance protein MlaD -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 76516.16 Da        Isoelectric Point: 7.7108

>NTDB_id=893612 AAH980_RS09965 WP_284081102.1 2117190..2119235(+) (recG) [Acinetobacter nosocomialis strain Ab25]
MTSVHQLQGVGSASAALLEKLNIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGEVKSVDFPPGKRKSMAVLIQD
EFGKVTLRFYHIYKNLTDKIKPGNRLRIFGEVRVGARGLELYHPEIQLINEHTPLPKTQLTAIYPSTDGLTQPKLREYVK
QALKHHSDALPELLPKQYTNGYALKEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLLTRRAYIRQIASPA
FPSSKVLAKKLLEALPFQMTNAQKRVSKEILIDLKQHQPMLRLVQGDVGAGKTLVAAVAACHALEADWQVALMAPTEILA
EQHYLNFKRWFEPLGITVAWLSGKQKGKARTQAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLAL
RNKGAEQLTPHQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLNRIATNCREGKQAYWVCTL
VEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQSVMQAFKNNELQLLIATTVIEVGVDVPNASIMVIENAER
LGLSQLHQLRGRVGRGAKASFCVLLYKPPLSQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLE
RDDHLLSQAHYVAQQVLKDYPEQADALLKRWLPEAPRYAYV

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=893612 AAH980_RS09965 WP_284081102.1 2117190..2119235(+) (recG) [Acinetobacter nosocomialis strain Ab25]
ATGACTTCAGTCCATCAGTTACAAGGCGTTGGATCGGCTTCAGCAGCCCTACTCGAAAAACTAAATATTTTTACCACAGA
TGATTTACTGTTTCATCTGCCCCGTGATTATGAAGATCGCAGTACCATTATTCCTATGAATCAATTGGTGGTTGGTCGTA
GTTATTTACTCGAGGGTGAAGTCAAATCTGTTGATTTCCCTCCAGGTAAACGTAAATCTATGGCCGTATTAATACAAGAT
GAATTTGGTAAGGTGACTTTACGCTTTTATCATATTTATAAAAATTTAACCGACAAAATAAAACCTGGTAACCGTTTACG
TATTTTTGGTGAAGTTCGCGTAGGTGCAAGGGGACTTGAGCTTTATCATCCAGAAATTCAGCTCATTAATGAGCATACGC
CTCTACCCAAAACGCAGCTCACGGCAATTTACCCAAGTACTGATGGTTTAACGCAACCTAAGTTACGTGAATATGTTAAA
CAGGCGTTGAAGCATCATAGTGATGCTCTACCCGAGCTGCTTCCTAAACAATATACAAATGGATACGCACTCAAAGAAGC
CCTACATTACATTCATGAGCCACCTGTCGATGCCAATATGATTCAATTGGCCCAAGGGTCTCATCCTGCTCAGCAACGCC
TTATTTTTGAAGAGTTGGTCGCACATCAAATTAGTCTTCTCACACGACGTGCTTATATTCGTCAAATTGCCTCACCTGCT
TTCCCAAGCAGCAAAGTACTTGCGAAAAAACTGTTAGAAGCTCTTCCCTTTCAAATGACCAACGCACAAAAGCGTGTATC
AAAAGAAATTTTAATCGACTTAAAACAACACCAACCGATGTTACGCTTAGTACAAGGTGATGTAGGTGCAGGTAAAACTT
TAGTTGCAGCAGTTGCTGCATGTCACGCCTTAGAAGCAGATTGGCAAGTTGCCTTAATGGCACCTACCGAAATTTTAGCA
GAGCAGCATTATTTAAATTTTAAGCGCTGGTTTGAACCTTTAGGTATTACAGTAGCTTGGCTGTCAGGCAAACAAAAAGG
TAAAGCACGAACACAAGCTGAACAACAAATCAAAGAAGGCCATGCCGAGCTTATTGTAGGTACGCATGCTTTGTTTCAAG
ATAATGTTGAGTTTGCCAAACTAGGACTCGTGATTATTGATGAGCAGCACCGCTTTGGGGTGGATCAACGATTAGCCTTA
CGCAACAAAGGCGCAGAACAACTCACACCACATCAACTCGTCATGACTGCAACGCCAATTCCTAGAACATTAGCAATGAG
TGCTTATGGCGATTTGGATACATCGATTATTGATGAATTGCCGCCAGGCCGAACTCCAATTCAGACCGTCACAATTCCGC
TAGATCGTCGTGAAGAAGTGCTAAATCGAATTGCTACAAATTGCCGAGAAGGTAAACAAGCCTACTGGGTATGTACTCTG
GTTGAACAGTCCGAAACTTTAGATGCTCAAGCTGCAGAAGCCACTTATCAAGAAATGAAAGAGCGCTTTCCTGAACTTAA
TATTGGTTTGGTTCATGGCAAAATGAAAGCTGATGAAAAGCAATCTGTCATGCAAGCATTTAAAAACAATGAACTACAAC
TGCTAATTGCAACAACTGTTATTGAGGTTGGGGTAGATGTACCTAATGCCTCAATTATGGTCATTGAAAATGCTGAACGC
TTAGGTCTTTCACAACTACACCAATTACGAGGTCGAGTCGGACGAGGTGCAAAGGCTAGTTTTTGTGTTCTTCTCTATAA
ACCCCCACTTTCACAAAATGGGCAAGAAAGACTTTCAATTTTAAGAGAAAGTAACGACGGCTTTGTCATTGCTGAAAAAG
ACCTTGAATTACGAGGTCCGGGTGAATTATTAGGAACAAAACAGACAGGTGATATGGGCTTCCGTGTCGCACGTTTAGAA
CGAGATGATCATTTACTGAGTCAAGCGCATTACGTTGCACAACAAGTTCTAAAAGATTACCCTGAGCAAGCTGACGCCCT
CTTGAAACGGTGGCTGCCTGAAGCACCTCGATACGCTTATGTTTAA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(7-163)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(605-663)

Helicase conserved C-terminal domain (Helicase_C)

(466-576)

DEAD/DEAH box helicase (DEAD)

(262-422)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.224

98.238

0.493
  recG/mmsA Streptococcus pneumoniae R6

40.813

97.504

0.398
  recG/mmsA Streptococcus pneumoniae R36A

40.813

97.504

0.398
  recG Bacillus subtilis subsp. subtilis str. 168

38.574

100

0.389