Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHP95_RS07550 Genome accession   NZ_CP154829
Coordinates   1432022..1432570 (+) Length   182 a.a.
NCBI ID   WP_002890071.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323HCJ0055     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1427022..1437570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP95_RS07515 (WHP95_07515) - 1427211..1427637 (+) 427 Protein_1449 GNAT family N-acetyltransferase -
  WHP95_RS07520 (WHP95_07520) - 1427701..1428321 (+) 621 WP_002899480.1 NAD(P)H-dependent oxidoreductase -
  WHP95_RS07525 (WHP95_07525) - 1428321..1428926 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  WHP95_RS07530 (WHP95_07530) pgsA 1429051..1429587 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WHP95_RS07535 (WHP95_07535) rseP 1429584..1430690 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  WHP95_RS07540 (WHP95_07540) - 1430683..1431549 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  WHP95_RS07545 (WHP95_07545) rpsF 1431636..1432010 (+) 375 WP_002890070.1 30S ribosomal protein S6 -
  WHP95_RS07550 (WHP95_07550) ssb 1432022..1432570 (+) 549 WP_002890071.1 single-stranded DNA-binding protein Machinery gene
  WHP95_RS07555 (WHP95_07555) rpsR 1432581..1432841 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  WHP95_RS07560 (WHP95_07560) lon 1432901..1435276 (-) 2376 WP_002853487.1 endopeptidase La -
  WHP95_RS07565 (WHP95_07565) - 1435293..1435940 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  WHP95_RS07570 (WHP95_07570) fliW 1436101..1436490 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  WHP95_RS07575 (WHP95_07575) proC 1436490..1437221 (+) 732 WP_002869050.1 pyrroline-5-carboxylate reductase Machinery gene
  WHP95_RS07580 (WHP95_07580) ctsT 1437218..1437520 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20594.53 Da        Isoelectric Point: 5.0431

>NTDB_id=893569 WHP95_RS07550 WP_002890071.1 1432022..1432570(+) (ssb) [Campylobacter jejuni strain Z1323HCJ0055]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLAKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNVPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=893569 WHP95_RS07550 WP_002890071.1 1432022..1432570(+) (ssb) [Campylobacter jejuni strain Z1323HCJ0055]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTGCAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGTTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363