Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   RJD36_RS11770 Genome accession   NZ_CP136943
Coordinates   2327253..2327966 (+) Length   237 a.a.
NCBI ID   WP_003066857.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP082     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2322253..2332966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS11755 (RJD36_11755) - 2323107..2323439 (+) 333 WP_003066848.1 hypothetical protein -
  RJD36_RS11760 (RJD36_11760) treC 2323389..2325068 (-) 1680 WP_048790988.1 alpha,alpha-phosphotrehalase -
  RJD36_RS11765 (RJD36_11765) treP 2325083..2327056 (-) 1974 WP_048790987.1 PTS system trehalose-specific EIIBC component -
  RJD36_RS11770 (RJD36_11770) treR 2327253..2327966 (+) 714 WP_003066857.1 trehalose operon repressor Regulator
  RJD36_RS11775 (RJD36_11775) - 2328376..2328726 (-) 351 Protein_2270 isopeptide-forming domain-containing fimbrial protein -
  RJD36_RS11780 (RJD36_11780) ruvB 2329554..2330552 (-) 999 WP_003066863.1 Holliday junction branch migration DNA helicase RuvB -
  RJD36_RS11785 (RJD36_11785) nrdG 2330681..2331295 (-) 615 WP_003066866.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  RJD36_RS11790 (RJD36_11790) - 2331336..2331842 (-) 507 WP_003066869.1 GNAT family N-acetyltransferase -
  RJD36_RS11795 (RJD36_11795) - 2331854..2332000 (-) 147 WP_013852326.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27388.39 Da        Isoelectric Point: 7.3320

>NTDB_id=893571 RJD36_RS11770 WP_003066857.1 2327253..2327966(+) (treR) [Streptococcus pasteurianus strain WUSP082]
MKKYEQIFKDLEHDITSGIYQAGDYLPTENELTQTYHMSRDTIRKALSLLAEAGLIQKIHGSGSQVIKHEQIDFPVSQLT
SYKELVDAHHINSKTNVIAIDKLIVDEKLAALTGFKKNNLVWRIIRQRVVDGTASVLDIDYLDKKIVPNMTREIAEQSIY
DYLENQLHLIIAFAQKEITIDQLTDRDKLLLDIGAEHHVVSVKSKVYLANKHQFQFTESRHKLEKFRFVDFATRKPQ

Nucleotide


Download         Length: 714 bp        

>NTDB_id=893571 RJD36_RS11770 WP_003066857.1 2327253..2327966(+) (treR) [Streptococcus pasteurianus strain WUSP082]
ATGAAAAAATACGAACAAATCTTTAAAGACCTTGAACACGATATTACCTCTGGCATTTACCAAGCTGGTGACTATCTCCC
CACCGAAAACGAGCTAACCCAAACCTACCATATGAGCCGTGACACTATCCGCAAAGCGCTTAGTCTCCTTGCTGAAGCAG
GGCTCATCCAGAAAATTCATGGTTCTGGCTCTCAAGTCATCAAACACGAGCAGATTGATTTTCCCGTTTCACAGCTCACA
AGCTATAAAGAACTGGTCGATGCTCACCATATCAATTCCAAAACCAATGTCATTGCCATTGATAAACTTATCGTTGATGA
AAAATTAGCTGCGCTGACAGGTTTCAAGAAAAATAACCTTGTCTGGCGAATCATTCGCCAACGTGTCGTTGACGGCACCG
CTTCTGTCCTTGACATTGATTATTTAGACAAAAAAATCGTGCCAAATATGACACGAGAAATCGCCGAACAATCCATTTAC
GATTACCTTGAAAACCAACTCCACCTCATCATCGCTTTCGCTCAAAAAGAAATCACCATTGACCAGCTAACTGACCGTGA
CAAACTACTCCTTGACATCGGTGCCGAACACCACGTTGTCTCTGTCAAATCAAAAGTTTACCTCGCCAACAAACACCAAT
TCCAATTCACCGAAAGCAGACACAAACTCGAAAAATTCCGCTTCGTTGACTTCGCAACCCGAAAACCACAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

71.795

98.734

0.709