Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   RJD36_RS11295 Genome accession   NZ_CP136943
Coordinates   2231163..2231630 (+) Length   155 a.a.
NCBI ID   WP_231557406.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP082     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2226163..2236630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS11265 (RJD36_11265) - 2226384..2226503 (-) 120 WP_253066439.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  RJD36_RS11270 (RJD36_11270) - 2226500..2226847 (-) 348 WP_231729919.1 CPBP family intramembrane glutamic endopeptidase -
  RJD36_RS11275 (RJD36_11275) - 2226877..2227056 (-) 180 WP_003066584.1 hypothetical protein -
  RJD36_RS11280 (RJD36_11280) - 2227423..2228528 (+) 1106 WP_249551291.1 IS3 family transposase -
  RJD36_RS11285 (RJD36_11285) - 2228847..2229077 (-) 231 WP_061100340.1 bacteriocin -
  RJD36_RS11290 (RJD36_11290) - 2229322..2231100 (+) 1779 Protein_2175 peptide cleavage/export ABC transporter -
  RJD36_RS11295 (RJD36_11295) comB 2231163..2231630 (+) 468 WP_231557406.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  RJD36_RS11300 (RJD36_11300) rsmA 2231764..2232636 (-) 873 WP_061100342.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  RJD36_RS11305 (RJD36_11305) - 2232717..2233241 (-) 525 WP_061100343.1 DUF1697 domain-containing protein -
  RJD36_RS11310 (RJD36_11310) rnmV 2233238..2233807 (-) 570 WP_048791091.1 ribonuclease M5 -
  RJD36_RS11315 (RJD36_11315) - 2233800..2234570 (-) 771 WP_061100344.1 TatD family hydrolase -
  RJD36_RS11320 (RJD36_11320) - 2234797..2236368 (+) 1572 WP_061100345.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17128.55 Da        Isoelectric Point: 9.8537

>NTDB_id=893567 RJD36_RS11295 WP_231557406.1 2231163..2231630(+) (comB) [Streptococcus pasteurianus strain WUSP082]
MQAQLDQTNLSKADTVLKASQSGILHVSDEFEGQTLLPQGSQIAEIYPDIAKTQQVAIRYYVDSTHVSQLKKGQTVRLTL
EKISNHAIVITGKISKIASSATQTKEGNIFEVTALATVDKQDSSKLKYGLQGKTISTIGKKTFFNYYKDKLLKDF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=893567 RJD36_RS11295 WP_231557406.1 2231163..2231630(+) (comB) [Streptococcus pasteurianus strain WUSP082]
TTGCAAGCGCAGCTTGACCAGACAAATCTCTCCAAAGCTGACACCGTTTTAAAAGCTAGTCAAAGTGGCATTTTACATGT
TTCTGATGAATTTGAAGGGCAAACGCTCTTGCCGCAAGGCAGTCAGATTGCAGAGATTTACCCAGATATTGCCAAAACAC
AGCAAGTCGCTATCCGCTATTACGTTGACTCCACTCATGTTAGTCAATTGAAAAAAGGACAGACTGTTCGCCTAACCCTT
GAAAAAATTAGCAATCACGCCATTGTTATCACTGGCAAAATCAGTAAAATTGCAAGTTCTGCCACACAAACCAAAGAAGG
AAATATCTTTGAGGTGACAGCACTAGCCACCGTTGATAAACAAGATAGCTCCAAACTAAAATATGGTTTACAAGGCAAAA
CAATCAGCACTATCGGCAAAAAAACTTTCTTTAATTATTACAAAGACAAGCTATTAAAAGATTTTTGA

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(16-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus mutans UA159

58.209

86.452

0.503
  comB/nlmE Streptococcus mutans UA159

52.985

86.452

0.458
  comB Streptococcus gordonii str. Challis substr. CH1

39.073

97.419

0.381