Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   RJD36_RS08935 Genome accession   NZ_CP136943
Coordinates   1764985..1765986 (-) Length   333 a.a.
NCBI ID   WP_061100202.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP082     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759985..1770986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS08920 (RJD36_08920) thrS 1760261..1762207 (-) 1947 WP_041974366.1 threonine--tRNA ligase -
  RJD36_RS08925 (RJD36_08925) - 1762557..1763891 (-) 1335 WP_003065797.1 glycosyltransferase family 4 protein -
  RJD36_RS08930 (RJD36_08930) - 1763893..1764891 (-) 999 WP_003065799.1 glycosyltransferase family 4 protein -
  RJD36_RS08935 (RJD36_08935) ccpA 1764985..1765986 (-) 1002 WP_061100202.1 catabolite control protein A Regulator
  RJD36_RS08940 (RJD36_08940) - 1766314..1767399 (+) 1086 WP_003065805.1 Xaa-Pro peptidase family protein -
  RJD36_RS08945 (RJD36_08945) - 1767739..1767921 (+) 183 WP_003065808.1 NUDIX domain-containing protein -
  RJD36_RS08950 (RJD36_08950) - 1767931..1768104 (-) 174 WP_230321727.1 hypothetical protein -
  RJD36_RS08955 (RJD36_08955) - 1768286..1769035 (-) 750 WP_013852120.1 ChbG/HpnK family deacetylase -
  RJD36_RS08960 (RJD36_08960) - 1769045..1770448 (-) 1404 WP_317751123.1 PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36538.62 Da        Isoelectric Point: 5.0353

>NTDB_id=893558 RJD36_RS08935 WP_061100202.1 1764985..1765986(-) (ccpA) [Streptococcus pasteurianus strain WUSP082]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPVVLAGTVDLEHQLPS
VNIDYKAAVVDVVDILAKSNKEIAFVSGPLIDDINGKVRLAGYKEGLEKNGLSFKEGLIFEANYNYKEGFELAQRVINSG
ATAAFVAEDELAAGLLNGLFEAGKKVPEDFEIITSNDSPITSYTRPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
LLNHGLITRGTTR

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=893558 RJD36_RS08935 WP_061100202.1 1764985..1765986(-) (ccpA) [Streptococcus pasteurianus strain WUSP082]
ATGAACACTGATGATACGATTACAATTTATGACGTTGCCCGAGAAGCAGGCGTCTCTATGGCAACAGTTAGTCGTGTTGT
AAATGGCAATAAAAACGTAAAGGAAAACACACGTAAAAAAGTTCTTGAAGTTATTGATCGTTTGGATTATCGTCCAAATG
CCGTTGCCCGCGGTTTAGCAAGTAAAAAGACAACAACAGTAGGTGTTGTTATTCCCAATATTGCCAATAGCTATTTCTCA
ATTCTTGCTAAAGGAATTGATGATATTGCCGCTATGTACAAGTATAATATCGTACTTGCTTCAAGTGATGAAGATGATGA
TAAGGAGGTTAACGTTGTTAACACCTTGTTTGCTAAACAAGTTGACGGTATTATCTTCATGGGACATCATTTGACTGAAA
AAATTCGTGCAGAGTTCTCTCGCTCACGCACACCAGTTGTACTTGCGGGTACAGTTGACTTAGAACACCAACTCCCAAGT
GTTAATATTGATTACAAAGCAGCGGTTGTTGATGTTGTTGATATTTTAGCTAAAAGCAATAAAGAAATTGCCTTTGTTTC
TGGTCCACTTATCGATGATATCAACGGTAAAGTGCGTTTAGCTGGTTACAAAGAAGGTCTTGAAAAAAATGGCTTATCAT
TCAAAGAAGGTCTTATCTTTGAAGCTAATTACAACTATAAAGAAGGATTTGAACTTGCACAACGTGTGATTAATTCTGGC
GCAACAGCAGCCTTTGTTGCCGAAGACGAATTGGCAGCAGGCTTACTGAACGGCTTGTTCGAAGCTGGCAAAAAAGTTCC
AGAAGACTTTGAAATCATCACAAGCAATGATTCACCAATTACATCATACACACGCCCAAACCTTAGCTCAATCAGTCAAC
CAGTTTATGACCTTGGTGCTGTCAGCATGCGTATGTTGACTAAAATCATGAACAAAGAGGAACTTGAAGAAAAAGAAATT
CTTCTTAACCATGGTCTTATAACACGTGGCACAACACGTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(8-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.88

100

0.799
  ccpA Streptococcus pneumoniae D39

77.477

100

0.775
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.589

99.399

0.553