Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   AAIS09_RS00920 Genome accession   NZ_CP154595
Coordinates   172655..173248 (+) Length   197 a.a.
NCBI ID   WP_061813408.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain serotype 4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 167655..178248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIS09_RS00900 (AAIS09_00895) ribE 168836..169303 (-) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -
  AAIS09_RS00905 (AAIS09_00900) - 169304..170509 (-) 1206 WP_369917044.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  AAIS09_RS00910 (AAIS09_00905) ribE 170529..171164 (-) 636 WP_000493842.1 riboflavin synthase -
  AAIS09_RS00915 (AAIS09_00910) ribD 171149..172249 (-) 1101 WP_001284095.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  AAIS09_RS00920 (AAIS09_00915) ruvA 172655..173248 (+) 594 WP_061813408.1 Holliday junction branch migration protein RuvA Machinery gene
  AAIS09_RS00925 (AAIS09_00920) - 173258..173821 (+) 564 WP_050206011.1 DNA-3-methyladenine glycosylase I -
  AAIS09_RS00930 (AAIS09_00925) - 173818..174495 (+) 678 WP_044813361.1 CPBP family intramembrane glutamic endopeptidase -
  AAIS09_RS00935 (AAIS09_00930) - 174650..175681 (-) 1032 WP_050206010.1 S66 family peptidase -
  AAIS09_RS00940 (AAIS09_00935) - 175936..176619 (-) 684 WP_050227233.1 DUF1129 domain-containing protein -
  AAIS09_RS00945 (AAIS09_00940) - 176631..177575 (-) 945 WP_000815629.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21636.12 Da        Isoelectric Point: 6.7338

>NTDB_id=893429 AAIS09_RS00920 WP_061813408.1 172655..173248(+) (ruvA) [Streptococcus pneumoniae strain serotype 4]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDDLPAKVAVQASTENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=893429 AAIS09_RS00920 WP_061813408.1 172655..173248(+) (ruvA) [Streptococcus pneumoniae strain serotype 4]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGCTCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTAATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGACCTTCCTGCCAAGGTCGCAGTGCAAGCAAGTACTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

99.492

100

0.995
  ruvA Streptococcus pneumoniae R6

98.985

100

0.99
  ruvA Streptococcus pneumoniae D39

98.985

100

0.99
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.291

100

0.421