Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCU42_RS01460 Genome accession   NZ_AP024905
Coordinates   328585..329217 (-) Length   210 a.a.
NCBI ID   WP_038179153.1    Uniprot ID   -
Organism   Vibrio ruber strain LMG 23124     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 323585..334217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU42_RS01440 - 324463..325041 (+) 579 WP_077336327.1 aminodeoxychorismate/anthranilate synthase component II -
  OCU42_RS01445 - 325304..326515 (+) 1212 WP_077336328.1 aspartate aminotransferase family protein -
  OCU42_RS01450 astA 326610..327632 (+) 1023 WP_077336329.1 arginine N-succinyltransferase -
  OCU42_RS01455 - 327697..328491 (+) 795 WP_077336423.1 DUF1338 domain-containing protein -
  OCU42_RS01460 crp 328585..329217 (-) 633 WP_038179153.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCU42_RS01465 - 329501..330370 (-) 870 WP_059119750.1 phosphoribulokinase -
  OCU42_RS01470 - 330490..330702 (-) 213 WP_077336331.1 YheU family protein -
  OCU42_RS01475 - 330907..331914 (-) 1008 WP_077336333.1 hydrolase -
  OCU42_RS01480 - 331949..332431 (-) 483 WP_077336334.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23508.30 Da        Isoelectric Point: 7.8387

>NTDB_id=89334 OCU42_RS01460 WP_038179153.1 328585..329217(-) (crp) [Vibrio ruber strain LMG 23124]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLAGQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=89334 OCU42_RS01460 WP_038179153.1 328585..329217(-) (crp) [Vibrio ruber strain LMG 23124]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTTCTTTCACATTGTCACATACATAAATACCCTTCAAA
GAGTACGCTGATTCATGCAGGCGAAAAAGCGGAAACGCTTTATTACATCGTGAAGGGATCTGTTGCTGTTCTGATCAAGG
ATGAAGAAGGGAAAGAAATGATCCTTTCTTACCTCAATCAGGGTGACTTCATCGGTGAACTTGGTTTATTCGAAGAAGGT
CAGGAACGAACAGCTTGGGTCAGAGCGAAATCTCCCTGCGAAGTTGCAGAAATTTCCTTCAAAAAGTTCCGTCAGTTAAT
TCAGGTCAATCCAGACATTTTGATGCGTCTGGCAGGACAGATGGCAAGTCGCCTTCAAGTCACCAGCCAGAAAGTCGGTG
ATCTGGCTTTTCTGGATGTTACTGGTCGAATTGCACAGACGCTGTTGAATCTGGCAAAACAACCCGATGCAATGACGCAT
CCGGACGGAATGCAAATCAAGATTACCCGTCAGGAGATCGGCCAGATTGTCGGCTGTTCGCGCGAAACCGTTGGCCGCAT
TTTGAAAATGCTCGAAGAGCAGAACCTTATTTCTGCCCACGGAAAAACAATCGTCGTTTACGGTACAAGATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment