Detailed information NTG0893290

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: R1T29_RS03135
• Genome accession: NZ_CP136903
• Coordinates: 637033..637902 (-)
• Length: 289 a.a.
• NCBI ID: WP_025552578.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain X1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 632033..642902

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R1T29_RS03100 (R1T29_03100)	rpsP	633050..633298 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
R1T29_RS03105 (R1T29_03105)	rimM	633327..633875 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
R1T29_RS03110 (R1T29_03110)	trmD	633903..634646 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
R1T29_RS03115 (R1T29_03115)	rplS	634688..635041 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
R1T29_RS03120 (R1T29_03120)	yacG	635387..635581 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
R1T29_RS03125 (R1T29_03125)	zapD	635650..636390 (-)	741	WP_023624252.1	cell division protein ZapD	-
R1T29_RS03130 (R1T29_03130)	coaE	636418..637032 (-)	615	WP_203503821.1	dephospho-CoA kinase	-
R1T29_RS03135 (R1T29_03135)	pilD	637033..637902 (-)	870	WP_025552578.1	A24 family peptidase	Machinery gene
R1T29_RS03140 (R1T29_03140)	pilC	637967..639190 (-)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
R1T29_RS03145 (R1T29_03145)	pilB	639214..640899 (-)	1686	WP_203503823.1	type IV-A pilus assembly ATPase PilB	Machinery gene
R1T29_RS03150 (R1T29_03150)	pilA	640900..641313 (-)	414	WP_029831396.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
R1T29_RS03155 (R1T29_03155)	nadC	641576..642463 (-)	888	WP_029798874.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32343.42 Da
• Isoelectric Point: 7.1971

>NTDB_id=893290 R1T29_RS03135 WP_025552578.1 637033..637902(-) (pilD) [Vibrio parahaemolyticus strain X1]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWASLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=893290 R1T29_RS03135 WP_025552578.1 637033..637902(-) (pilD) [Vibrio parahaemolyticus strain X1]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGCAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.581	100	0.886
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45