Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   R1T29_RS01965 Genome accession   NZ_CP136903
Coordinates   412989..413633 (-) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain X1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 407989..418633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T29_RS01955 (R1T29_01955) uvrA 408900..411722 (-) 2823 WP_029830918.1 excinuclease ABC subunit UvrA -
  R1T29_RS01960 (R1T29_01960) galU 411859..412731 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  R1T29_RS01965 (R1T29_01965) qstR 412989..413633 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  R1T29_RS01970 (R1T29_01970) ssb 413912..414442 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  R1T29_RS01975 (R1T29_01975) csrD 414683..416692 (+) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  R1T29_RS01980 (R1T29_01980) - 416704..418149 (+) 1446 WP_021454231.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=893281 R1T29_RS01965 WP_005480993.1 412989..413633(-) (qstR) [Vibrio parahaemolyticus strain X1]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=893281 R1T29_RS01965 WP_005480993.1 412989..413633(-) (qstR) [Vibrio parahaemolyticus strain X1]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523