Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCV37_RS01545 Genome accession   NZ_AP024903
Coordinates   357843..358475 (-) Length   210 a.a.
NCBI ID   WP_038179153.1    Uniprot ID   -
Organism   Vibrio rhizosphaerae strain LMG 23790     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 352843..363475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV37_RS01525 - 353730..354308 (+) 579 WP_038179160.1 aminodeoxychorismate/anthranilate synthase component II -
  OCV37_RS01530 - 354571..355782 (+) 1212 WP_038179159.1 aspartate aminotransferase family protein -
  OCV37_RS01535 astA 355888..356910 (+) 1023 WP_038179157.1 arginine N-succinyltransferase -
  OCV37_RS01540 - 356975..357769 (+) 795 WP_038179155.1 DUF1338 domain-containing protein -
  OCV37_RS01545 crp 357843..358475 (-) 633 WP_038179153.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCV37_RS01550 - 358746..359615 (-) 870 WP_038179151.1 phosphoribulokinase -
  OCV37_RS01555 - 359733..359945 (-) 213 WP_038179149.1 YheU family protein -
  OCV37_RS01560 - 360148..361125 (-) 978 WP_390902285.1 hydrolase -
  OCV37_RS01565 - 361176..361658 (-) 483 WP_038179147.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23508.30 Da        Isoelectric Point: 7.8387

>NTDB_id=89302 OCV37_RS01545 WP_038179153.1 357843..358475(-) (crp) [Vibrio rhizosphaerae strain LMG 23790]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLAGQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=89302 OCV37_RS01545 WP_038179153.1 357843..358475(-) (crp) [Vibrio rhizosphaerae strain LMG 23790]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTTCTTTCACATTGTCACATACATAAATACCCTTCAAA
GAGTACGCTGATTCATGCAGGCGAAAAAGCGGAAACGCTTTACTACATCGTGAAGGGATCTGTTGCTGTTCTGATCAAGG
ATGAAGAAGGAAAAGAAATGATCCTTTCTTATCTCAATCAGGGTGACTTCATCGGTGAACTTGGTTTATTCGAAGAAGGT
CAAGAACGGACAGCTTGGGTCAGAGCGAAATCTCCCTGCGAAGTTGCAGAAATTTCCTTCAAAAAATTCCGTCAGTTAAT
TCAGGTCAACCCAGATATTCTGATGCGTCTGGCAGGACAAATGGCAAGCCGCCTGCAAGTCACTAGCCAAAAAGTTGGTG
ATCTGGCGTTTCTGGATGTGACTGGTCGTATTGCACAGACGCTGTTAAATCTGGCAAAACAACCCGATGCAATGACGCAT
CCAGACGGTATGCAAATCAAAATTACTCGTCAGGAGATCGGCCAGATCGTCGGCTGTTCTCGTGAAACCGTTGGCCGCAT
CTTGAAAATGCTCGAAGAGCAGAACCTTATTTCAGCCCACGGGAAAACCATTGTTGTTTACGGTACAAGATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment