Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AABK13_RS16310 Genome accession   NZ_AP027697
Coordinates   3364311..3364943 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain PSS-12     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3359311..3369943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK13_RS16285 (VEE19_31450) yhfG 3359443..3359610 (+) 168 WP_000736860.1 YhfG family protein -
  AABK13_RS16290 (VEE19_31460) fic 3359600..3360202 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  AABK13_RS16295 (VEE19_31470) pabA 3360234..3360797 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  AABK13_RS16300 (VEE19_31480) argD 3360883..3362103 (+) 1221 WP_087899994.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AABK13_RS16305 (VEE19_31490) yhfK 3362170..3364260 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  AABK13_RS16310 (VEE19_31500) crp 3364311..3364943 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AABK13_RS16315 (VEE19_31510) yhfA 3365245..3365649 (+) 405 WP_001148908.1 OsmC family protein -
  AABK13_RS16320 (VEE19_31520) prkB 3365704..3366573 (-) 870 WP_001274680.1 phosphoribulokinase -
  AABK13_RS16325 (VEE19_31530) yheU 3366627..3366845 (-) 219 WP_000907085.1 YheU family protein -
  AABK13_RS16330 (VEE19_31540) yheT 3366839..3367861 (-) 1023 WP_000057356.1 hydrolase -
  AABK13_RS16335 (VEE19_31550) yheS 3367861..3369774 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=89293 AABK13_RS16310 WP_000242755.1 3364311..3364943(-) (crp) [Escherichia coli strain PSS-12]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=89293 AABK13_RS16310 WP_000242755.1 3364311..3364943(-) (crp) [Escherichia coli strain PSS-12]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467