Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   RYQ61_RS05910 Genome accession   NZ_CP136799
Coordinates   1137121..1139079 (+) Length   652 a.a.
NCBI ID   WP_102567816.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1132121..1144079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS05890 (RYQ61_05890) rsmH 1132194..1133144 (+) 951 WP_003078305.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  RYQ61_RS05895 (RYQ61_05895) ftsL 1133153..1133470 (+) 318 WP_003070323.1 cell division protein FtsL -
  RYQ61_RS05900 (RYQ61_05900) pbp2X 1133474..1135732 (+) 2259 WP_117276649.1 penicillin-binding protein PBP2X -
  RYQ61_RS05905 (RYQ61_05905) mraY 1135734..1136717 (+) 984 WP_003078417.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  RYQ61_RS05910 (RYQ61_05910) amiA 1137121..1139079 (+) 1959 WP_102567816.1 peptide ABC transporter substrate-binding protein Regulator
  RYQ61_RS05920 (RYQ61_05920) - 1139367..1139858 (+) 492 Protein_1120 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  RYQ61_RS05925 (RYQ61_05925) - 1139984..1140394 (+) 411 WP_009568076.1 GyrI-like domain-containing protein -
  RYQ61_RS05935 (RYQ61_05935) - 1140807..1141688 (+) 882 WP_009568077.1 class II fructose-bisphosphate aldolase -
  RYQ61_RS05940 (RYQ61_05940) - 1142001..1143107 (+) 1107 WP_102567815.1 hypothetical protein -
  RYQ61_RS05945 (RYQ61_05945) - 1143324..1143473 (+) 150 WP_162885563.1 hypothetical protein -
  RYQ61_RS05950 (RYQ61_05950) - 1143511..1143949 (+) 439 Protein_1125 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72558.05 Da        Isoelectric Point: 9.1519

>NTDB_id=892726 RYQ61_RS05910 WP_102567816.1 1137121..1139079(+) (amiA) [Streptococcus intermedius strain XH2169]
MKSSKWIIATGIVLSAGILLAGCGKSSSSTSTYSYVYTQDPDTLNYLMANRATTSDVVTNLVDGLLENDRYGNLVPALAK
SWTVSKDGLTYTYKLRKDAKWYTSEGEEYAGVKAQDFVTGLKYAADNKSEALYLVQDSVKGLDAYIKGETKDFSKVGVKA
IDDYTVQYTLSRAETYWNSKTTNNILFPVNAAFLKSQGKNFGSVKPSSILYNGPYLLKSLTAKSSMEFAKNPHYYDKKNV
HLDNIKLTYYDGSDQEALIRNFTEGAYSAARLYPNSSSFASVKKQYNNNIIYSLQDATSYYYNFNLNRQSYHHTSKKTDA
QKTATQEAVLNKAFRQAINFAYNRTSYGAQSNGKDGATKVLRNTLVPPTFVSIGDKTFGDLVSSKLVKYGSEWSDMNLAD
AQDAYYNPAKAKVKFAQAKAELQAKGVQFPIHLDVPADQTSKIGVQWESSMKQSVESVLGKENVVIDIQQMSSDELNNIG
YFANTAAQKDYDLYNGGWSGDYQDPSTYLDTLNTKNGGSLKNFGLEPGQENDKIKTVGLDTYTTMLEEANAETNETKRYE
KYAEAQAWLIDSGLTMPNLSLGGTPSVTKTVPFSRSYSLVGIKGGSSNYFKYVKLQDKIVTTKEYESAKKKWLKEKEASN
KKAQDNYENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=892726 RYQ61_RS05910 WP_102567816.1 1137121..1139079(+) (amiA) [Streptococcus intermedius strain XH2169]
ATGAAATCATCAAAATGGATTATTGCAACGGGAATTGTACTAAGTGCTGGAATTTTATTGGCTGGTTGTGGCAAGTCAAG
CTCTAGCACATCGACATATTCATATGTGTATACACAAGATCCAGATACGCTGAATTATTTGATGGCGAATCGAGCAACAA
CATCAGATGTTGTTACCAATTTAGTTGATGGATTATTAGAAAATGACCGATACGGGAACTTAGTTCCAGCACTTGCTAAG
TCATGGACAGTCTCCAAAGATGGTTTGACGTATACGTATAAATTACGTAAAGACGCGAAATGGTACACATCAGAAGGCGA
AGAGTACGCAGGTGTAAAAGCACAAGACTTTGTAACTGGTTTGAAATATGCTGCAGATAACAAATCCGAAGCTCTTTACC
TTGTACAAGACTCTGTCAAAGGATTAGATGCGTATATCAAAGGGGAGACAAAAGATTTTTCAAAGGTAGGTGTAAAAGCT
ATTGATGATTATACAGTACAGTATACTCTGAGTCGTGCAGAAACTTATTGGAATTCAAAAACAACCAATAACATCCTCTT
CCCAGTCAATGCAGCCTTCTTAAAATCCCAAGGAAAGAATTTTGGTTCTGTAAAACCGAGTAGCATTCTTTACAACGGTC
CATATCTGCTGAAGTCTTTGACGGCTAAATCCTCTATGGAATTTGCAAAAAATCCTCATTATTATGACAAAAAGAATGTT
CATTTAGACAATATAAAGTTGACATATTATGATGGATCGGACCAAGAAGCGCTTATTCGAAACTTTACTGAGGGTGCTTA
TAGTGCAGCCCGTCTTTATCCAAATAGTTCTAGTTTTGCTTCTGTTAAGAAACAGTATAATAACAATATCATCTATAGTT
TACAAGATGCGACCAGTTATTATTATAACTTTAACTTAAATCGTCAGTCCTATCACCATACATCTAAGAAAACAGATGCA
CAAAAAACTGCAACACAGGAGGCAGTACTCAATAAAGCATTTCGTCAAGCAATCAATTTCGCCTACAATCGAACGTCTTA
TGGTGCGCAAAGCAATGGGAAAGATGGAGCGACAAAAGTATTGCGGAATACACTTGTTCCACCAACGTTTGTTTCAATTG
GTGATAAAACATTTGGGGATCTCGTATCTTCCAAATTGGTGAAGTACGGTTCAGAATGGTCTGATATGAATTTGGCTGAT
GCACAGGATGCTTACTACAATCCAGCAAAAGCAAAAGTAAAATTTGCACAAGCAAAAGCAGAGTTGCAAGCTAAAGGAGT
TCAGTTCCCAATTCATTTGGATGTACCGGCTGATCAGACAAGTAAAATTGGTGTTCAATGGGAAAGTTCTATGAAACAAT
CTGTTGAGTCTGTTTTAGGAAAAGAGAATGTTGTCATTGATATTCAACAAATGAGTTCAGATGAATTGAACAACATTGGC
TACTTTGCTAATACTGCTGCTCAAAAAGATTATGATTTATACAATGGCGGATGGTCAGGGGACTATCAAGATCCATCAAC
TTATCTAGATACCTTGAATACAAAAAATGGTGGTAGTTTGAAGAACTTTGGCTTGGAACCTGGTCAAGAGAACGATAAGA
TAAAAACTGTTGGTTTGGATACCTATACTACAATGCTTGAGGAAGCAAATGCTGAAACCAATGAGACGAAGCGTTATGAG
AAATATGCTGAAGCGCAGGCGTGGTTAATTGATAGTGGGTTGACAATGCCAAATCTTTCTCTTGGAGGAACACCATCTGT
GACAAAGACAGTTCCGTTTAGCCGTTCATATTCTCTAGTAGGAATTAAGGGTGGTTCAAGCAACTACTTTAAATATGTTA
AGTTGCAAGATAAAATTGTGACGACCAAAGAATACGAAAGTGCTAAAAAGAAATGGCTGAAAGAAAAAGAAGCTTCTAAT
AAAAAAGCACAAGATAACTATGAAAATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.534

100

0.58
  amiA3 Streptococcus thermophilus LMD-9

57.23

100

0.577
  amiA3 Streptococcus thermophilus LMG 18311

57.078

100

0.575