Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCU56_RS00935 Genome accession   NZ_AP024900
Coordinates   205717..206349 (-) Length   210 a.a.
NCBI ID   WP_017029447.1    Uniprot ID   V5FDW9
Organism   Vibrio rarus strain LMG 23674     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 200717..211349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU56_RS00915 - 201040..202248 (+) 1209 WP_261873740.1 aspartate aminotransferase family protein -
  OCU56_RS00920 astA 202272..203291 (+) 1020 WP_261873741.1 arginine N-succinyltransferase -
  OCU56_RS00925 astD 203315..204778 (+) 1464 WP_261873742.1 succinylglutamate-semialdehyde dehydrogenase -
  OCU56_RS00930 - 204797..205588 (+) 792 WP_261873743.1 DUF1338 domain-containing protein -
  OCU56_RS00935 crp 205717..206349 (-) 633 WP_017029447.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCU56_RS00940 - 206575..207444 (-) 870 WP_261873744.1 phosphoribulokinase -
  OCU56_RS00945 - 207511..207732 (-) 222 WP_261873745.1 YheU family protein -
  OCU56_RS00950 - 207742..208731 (-) 990 WP_261873746.1 hydrolase -
  OCU56_RS00955 - 208728..209192 (-) 465 WP_261873747.1 TIGR02444 family protein -
  OCU56_RS00960 - 209189..211108 (-) 1920 WP_261873748.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23625.36 Da        Isoelectric Point: 7.4009

>NTDB_id=89272 OCU56_RS00935 WP_017029447.1 205717..206349(-) (crp) [Vibrio rarus strain LMG 23674]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEDD
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSSQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=89272 OCU56_RS00935 WP_017029447.1 205717..206349(-) (crp) [Vibrio rarus strain LMG 23674]
ATGGTTTTAGGTAAACCTCAAACAGATCCAACGTTAGAATGGTTTTTGTCACATTGCCACATCCACAAATACCCTTCAAA
GAGCACATTGATCCACGCTGGTGAAAAAGCAGAAACGCTTTACTACATCGTAAAAGGTTCTGTTGCCGTATTGATCAAAG
ATGAAGAAGGGAAAGAAATGATTCTTTCTTACCTAAACCAAGGTGACTTCATCGGTGAATTGGGTCTTTTCGAAGACGAT
CAAGAGCGTACAGCTTGGGTTCGAGCAAAATCTCCATGTGAAGTGGCAGAAATCTCATTCAAGAAATTCCGTCAGCTTAT
CCAAGTTAACCCAGACATCCTAATGCGTCTTTCTTCGCAAATGGCTAACCGTCTACAAGTTACTAGCCAAAAAGTAGGTG
ACCTTGCATTCCTTGACGTTACAGGTCGTATTGCACAGACGCTACTAAACCTTGCTAAACAGCCAGATGCTATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAGATCGGTCAGATTGTAGGTTGTTCTCGTGAAACTGTAGGCCGTAT
CTTGAAGATGCTTGAAGAGCAGAATCTTATCTCTGCACACGGTAAAACGATTGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5FDW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.143

100

0.971
  crp Haemophilus influenzae Rd KW20

74.02

97.143

0.719
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment