Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCV11_RS15120 Genome accession   NZ_AP024895
Coordinates   3305613..3306245 (+) Length   210 a.a.
NCBI ID   WP_068715351.1    Uniprot ID   -
Organism   Vibrio porteresiae DSM 19223 strain MSSRF30     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3300613..3311245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV11_RS15095 - 3300715..3302637 (+) 1923 WP_261893841.1 ABC transporter ATP-binding protein -
  OCV11_RS15100 - 3302637..3303119 (+) 483 WP_261893843.1 TIGR02444 family protein -
  OCV11_RS15105 - 3303165..3304145 (+) 981 WP_261893844.1 hydrolase -
  OCV11_RS15110 - 3304200..3304409 (+) 210 WP_261893845.1 YheU family protein -
  OCV11_RS15115 - 3304502..3305371 (+) 870 WP_261893847.1 phosphoribulokinase -
  OCV11_RS15120 crp 3305613..3306245 (+) 633 WP_068715351.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCV11_RS15125 - 3306323..3307111 (-) 789 WP_261893848.1 DUF1338 domain-containing protein -
  OCV11_RS15130 astD 3307186..3308643 (-) 1458 WP_261893849.1 succinylglutamate-semialdehyde dehydrogenase -
  OCV11_RS15135 astA 3308662..3309681 (-) 1020 WP_261893850.1 arginine N-succinyltransferase -
  OCV11_RS15140 - 3309781..3310992 (-) 1212 WP_261893851.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23579.39 Da        Isoelectric Point: 8.2772

>NTDB_id=89259 OCV11_RS15120 WP_068715351.1 3305613..3306245(+) (crp) [Vibrio porteresiae DSM 19223 strain MSSRF30]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=89259 OCV11_RS15120 WP_068715351.1 3305613..3306245(+) (crp) [Vibrio porteresiae DSM 19223 strain MSSRF30]
ATGGTTCTAGGTAAACCTCAAACAGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCACAAATACCCATCAAA
AAGCACTTTGATTCATGCGGGTGAGAAGGCAGAAACGCTGTATTACATCGTAAAAGGTTCTGTTGCGGTATTAATTAAAG
ATGAAGAAGGCAAGGAGATGATCCTTTCCTATCTGAATCAGGGTGATTTTATCGGTGAACTTGGTCTTTTCGAAGAAGGT
CAAGAACGTAGCGCCTGGGTTCGCGCGAAATCTCCATGTGAAGTAGCTGAAATTTCATTTAAGAAATTCCGTCAGCTAAT
TCAAGTTAACCCAGACATTCTAATGCGTCTTTCTGGTCAAATGGCACGTCGCCTACAAGTGACCAGCCAAAAAGTGGGCG
ATTTAGCCTTCCTTGATGTGACTGGCCGTATTGCTCAGACTCTTTTGAATCTAGCAAAACAACCTGATGCAATGACCCAC
CCAGATGGTATGCAAATTAAAATTACCCGTCAGGAAATTGGTCAAATCGTTGGTTGTTCACGTGAAACGGTTGGTCGTAT
TCTCAAGATGCTTGAAGAACAAAACCTTATTTCTGCACACGGCAAAACTATCGTCGTGTACGGCACCCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.571

100

0.986
  crp Haemophilus influenzae Rd KW20

75.98

97.143

0.738
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment