Detailed information NTG0892503

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: R1T46_RS20715
• Genome accession: NZ_CP136693
• Coordinates: 4452608..4453993 (+)
• Length: 461 a.a.
• NCBI ID: WP_317306885.1
• Uniprot ID: -
• Organism: Marinobacter salarius strain CI.11.F.A3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4447608..4458993

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R1T46_RS20700 (R1T46_20700)	-	4448289..4449125 (+)	837	WP_317306881.1	outer membrane protein assembly factor BamD	-
R1T46_RS20705 (R1T46_20705)	-	4449170..4450822 (-)	1653	WP_317306882.1	NAD+ synthase	-
R1T46_RS20710 (R1T46_20710)	-	4450908..4452554 (+)	1647	WP_317306884.1	sensor histidine kinase	-
R1T46_RS20715 (R1T46_20715)	pilR	4452608..4453993 (+)	1386	WP_317306885.1	sigma-54 dependent transcriptional regulator	Regulator
R1T46_RS21670	-	4454081..4454644 (+)	564	WP_410797516.1	GspH/FimT family pseudopilin	-
R1T46_RS20720 (R1T46_20720)	-	4454673..4455104 (-)	432	WP_317306887.1	type IV pilin protein	-
R1T46_RS20725 (R1T46_20725)	-	4455170..4458799 (-)	3630	WP_317306889.1	pilus assembly protein	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 50754.01 Da
• Isoelectric Point: 4.9128

>NTDB_id=892503 R1T46_RS20715 WP_317306885.1 4452608..4453993(+) (pilR) [Marinobacter salarius strain CI.11.F.A3]
MTTHTALIVDDEPDIRDLLEITLTRMGITTLTAPDITCAKKLLGEHKPQLCLTDMNLPDGNGIELVQWIQHNTPSTPVAV
ITAYGNMDTAIESLKAGAFDFVSKPVELPRLRELVNSALKLSEPDPEADAGSDEPGLLLGQSSEIKRLRNQVRKLARSQA
PVFISGESGSGKELVARMIHIQGPRRDKPFIAVNCGAIPSELMESEFFGHKKGSFTGAVDNKDGLFRSADGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRPVGDTKEVPVDIRVLSATHKDLPNLVLEGEFRQDLFYRINVIELPVPALRDRPDDINLLS
RHILERIAREYECEPASLTHEAIERLKGYDFPGNVRELENILERAFTLCDADLIGPEDLHLGNGPTSSGLALAGSTALSA
EHDALAVPEGEIDLENYLETIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGME

Nucleotide

• Length: 1386 bp

>NTDB_id=892503 R1T46_RS20715 WP_317306885.1 4452608..4453993(+) (pilR) [Marinobacter salarius strain CI.11.F.A3]
ATGACCACTCATACCGCCCTGATCGTAGACGACGAACCCGATATCCGGGACCTCCTGGAAATTACTCTGACCCGAATGGG
AATAACAACCCTGACTGCCCCCGACATCACCTGTGCGAAAAAGCTTCTGGGTGAGCACAAGCCACAACTCTGCCTCACAG
ATATGAACCTGCCCGACGGCAACGGCATCGAACTCGTGCAATGGATCCAGCACAATACGCCCAGCACCCCGGTGGCTGTC
ATTACTGCCTACGGCAACATGGATACGGCCATTGAGTCCCTGAAGGCCGGGGCCTTCGATTTTGTGTCCAAGCCGGTTGA
GCTCCCGCGGCTTCGGGAGTTGGTCAACAGTGCTCTCAAACTGTCTGAGCCAGATCCAGAAGCGGACGCCGGCTCGGATG
AGCCTGGCCTATTACTAGGCCAATCGTCTGAGATCAAGCGCCTGAGAAACCAGGTGCGAAAACTCGCCAGGAGCCAGGCG
CCGGTATTCATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTTGCACGCATGATCCACATCCAGGGCCCCCGCCGGGA
CAAACCTTTTATCGCGGTTAACTGCGGCGCAATACCGTCGGAGTTGATGGAAAGCGAGTTTTTTGGCCACAAGAAAGGAA
GTTTTACCGGTGCGGTGGACAACAAGGACGGACTCTTTCGTTCCGCCGATGGCGGCACCCTGTTTCTGGATGAAGTTGCT
GACCTGCCGCTTGCAATGCAAGTAAAGTTGCTGCGTGCCATCCAGGAAAAAGCCGTTCGACCAGTAGGTGACACCAAGGA
GGTGCCGGTGGACATCCGCGTGCTGAGCGCCACCCACAAAGACTTGCCCAATCTGGTACTGGAAGGTGAGTTTCGCCAGG
ATCTGTTCTACCGGATCAACGTCATCGAGTTGCCGGTGCCGGCGCTGAGAGACCGTCCGGATGATATTAACCTCCTCTCA
AGACACATTCTCGAGCGCATTGCCCGGGAATATGAGTGTGAGCCAGCATCATTGACCCACGAGGCGATCGAGAGACTAAA
AGGCTATGATTTCCCGGGCAATGTGCGAGAACTGGAGAACATCCTGGAGCGGGCTTTCACGCTCTGCGATGCAGACCTGA
TTGGCCCTGAGGACCTCCACCTTGGTAACGGCCCGACATCGTCCGGACTCGCACTCGCCGGCAGCACGGCGCTCTCCGCT
GAGCATGACGCACTGGCCGTACCGGAGGGAGAAATTGACCTGGAAAACTACCTGGAAACCATTGAACGGCAAGCTATCGA
GAAAGCCCTTGAGGCAACCCGATGGAACAAGACAGCGGCGGCCAAAAGGCTGGGGATCAGTTTCAGGGCGTTGAGGTATC
GGTTGAAGAAGCTGGGGATGGAATGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (418-458)

• Sigma-54 interaction domain (Sigma54_activat) (138-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.203	100	0.633
pilR	Acinetobacter baumannii strain A118	51.193	100	0.512
luxO	Vibrio cholerae strain A1552	37.225	98.482	0.367