Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   R1T46_RS05000 Genome accession   NZ_CP136693
Coordinates   1093988..1094380 (-) Length   130 a.a.
NCBI ID   WP_007154228.1    Uniprot ID   -
Organism   Marinobacter salarius strain CI.11.F.A3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1088988..1099380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T46_RS04980 (R1T46_04980) - 1089933..1090832 (-) 900 WP_317307541.1 CheR family methyltransferase -
  R1T46_RS04985 (R1T46_04985) - 1090860..1092935 (-) 2076 WP_317307542.1 methyl-accepting chemotaxis protein -
  R1T46_RS04990 (R1T46_04990) - 1093027..1093572 (-) 546 WP_317307543.1 chemotaxis protein CheW -
  R1T46_RS04995 (R1T46_04995) pilH 1093593..1093955 (-) 363 WP_286811011.1 twitching motility response regulator PilH -
  R1T46_RS05000 (R1T46_05000) pilG 1093988..1094380 (-) 393 WP_007154228.1 twitching motility response regulator PilG Regulator
  R1T46_RS05005 (R1T46_05005) gshB 1094676..1095623 (+) 948 WP_317307544.1 glutathione synthase -
  R1T46_RS05010 (R1T46_05010) - 1095663..1096529 (+) 867 WP_317307545.1 energy transducer TonB -
  R1T46_RS05015 (R1T46_05015) - 1096526..1097092 (+) 567 WP_317307546.1 YqgE/AlgH family protein -
  R1T46_RS05020 (R1T46_05020) ruvX 1097085..1097525 (+) 441 WP_317307547.1 Holliday junction resolvase RuvX -
  R1T46_RS05025 (R1T46_05025) pyrR 1097558..1098067 (+) 510 WP_036211374.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  R1T46_RS05030 (R1T46_05030) - 1098099..1099112 (+) 1014 WP_317307548.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14594.87 Da        Isoelectric Point: 6.3343

>NTDB_id=892487 R1T46_RS05000 WP_007154228.1 1093988..1094380(-) (pilG) [Marinobacter salarius strain CI.11.F.A3]
MDDNFENLKIMVIDDSKTIRRTAETLLKKVGCEVITATDGFDALAKIADSQPNIIFVDIMMPRLDGYQTCALIKNNSSFK
KTPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKDELLNTIRQYVPQAEQ

Nucleotide


Download         Length: 393 bp        

>NTDB_id=892487 R1T46_RS05000 WP_007154228.1 1093988..1094380(-) (pilG) [Marinobacter salarius strain CI.11.F.A3]
ATGGATGACAACTTCGAGAATCTGAAGATTATGGTGATCGACGACAGCAAGACTATTCGTCGCACCGCCGAAACCCTTCT
TAAAAAAGTCGGTTGCGAAGTCATTACCGCAACAGATGGCTTTGACGCTCTGGCGAAAATTGCCGATTCCCAGCCCAATA
TCATTTTCGTCGATATCATGATGCCCCGGCTGGACGGCTACCAGACCTGCGCACTGATCAAGAACAATTCCTCTTTCAAA
AAGACGCCGGTCATCATGCTCTCCAGTAAAGATGGACTGTTCGACAAGGCCAAAGGCCGGATTGTCGGATCAGACCAGTA
TCTGACCAAACCGTTCAGCAAGGACGAGCTTCTAAACACGATTCGCCAGTATGTTCCCCAGGCGGAACAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

77.6

96.154

0.746
  vicR Streptococcus mutans UA159

41.322

93.077

0.385
  micA Streptococcus pneumoniae Cp1015

43.119

83.846

0.362