Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCV04_RS13445 Genome accession   NZ_AP024893
Coordinates   2902987..2903619 (+) Length   210 a.a.
NCBI ID   WP_004728582.1    Uniprot ID   A0A7X4LI26
Organism   Vibrio plantisponsor strain CECT 7581     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2897987..2908619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV04_RS13420 - 2897991..2899913 (+) 1923 WP_171138352.1 ABC transporter ATP-binding protein -
  OCV04_RS13425 - 2899910..2900380 (+) 471 WP_102941176.1 TIGR02444 family protein -
  OCV04_RS13430 - 2900500..2901480 (+) 981 WP_171138351.1 hydrolase -
  OCV04_RS13435 - 2901572..2901781 (+) 210 WP_102941178.1 YheU family protein -
  OCV04_RS13440 - 2901877..2902746 (+) 870 WP_102941179.1 phosphoribulokinase -
  OCV04_RS13445 crp 2902987..2903619 (+) 633 WP_004728582.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCV04_RS13450 - 2903724..2904527 (-) 804 WP_102941180.1 DUF1338 domain-containing protein -
  OCV04_RS13455 astD 2904678..2906135 (-) 1458 WP_171138350.1 succinylglutamate-semialdehyde dehydrogenase -
  OCV04_RS13460 astA 2906156..2907175 (-) 1020 WP_171138349.1 arginine N-succinyltransferase -
  OCV04_RS13465 - 2907261..2908472 (-) 1212 WP_102953977.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23593.41 Da        Isoelectric Point: 8.2772

>NTDB_id=89225 OCV04_RS13445 WP_004728582.1 2902987..2903619(+) (crp) [Vibrio plantisponsor strain CECT 7581]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=89225 OCV04_RS13445 WP_004728582.1 2902987..2903619(+) (crp) [Vibrio plantisponsor strain CECT 7581]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCTTCAAA
AAGCACGCTGATTCACGCGGGCGAGAAAGCAGAAACTTTGTACTACATTGTTAAAGGTTCTGTTGCGGTACTGATTAAAG
ATGAAGAAGGAAAGGAAATGATCCTTTCTTACCTAAACCAAGGTGATTTCATCGGTGAACTTGGCTTGTTTGAAGAAGGT
CAAGAGCGTACAGCATGGGTTAGAGCTAAATCTCCATGTGAAGTTGCAGAAATTTCATTTAAGAAATTCCGTCAGCTTAT
CCAAGTTAACCCAGATATTTTAATGCGTCTTTCTGGTCAGATGGCTCGTCGTCTACAAGTAACAAGCCAGAAAGTTGGTG
ACCTTGCGTTCCTAGACGTAACAGGCCGCATTGCACAGACGCTTCTTAACTTAGCGAAACAACCTGACGCAATGACTCAC
CCAGACGGCATGCAGATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
TCTGAAGATGCTTGAAGAGCAGAACCTAATTTCAGCTCACGGTAAGACTATCGTTGTGTACGGAACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4LI26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.048

100

0.99
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment