Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RZ534_RS17080 Genome accession   NZ_CP136643
Coordinates   3282547..3283236 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain RS1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3277547..3288236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZ534_RS17045 (RZ534_17045) - 3277633..3278115 (-) 483 WP_007499977.1 flagellar protein FlgN -
  RZ534_RS17050 (RZ534_17050) flgM 3278134..3278397 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  RZ534_RS17055 (RZ534_17055) - 3278477..3278896 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  RZ534_RS17060 (RZ534_17060) - 3278953..3279675 (-) 723 WP_390308590.1 ComF family protein -
  RZ534_RS17065 (RZ534_17065) - 3279636..3279929 (-) 294 WP_035701582.1 late competence development ComFB family protein -
  RZ534_RS17070 (RZ534_17070) comFA 3279994..3281373 (-) 1380 WP_394804960.1 DEAD/DEAH box helicase Machinery gene
  RZ534_RS17075 (RZ534_17075) - 3281493..3282335 (-) 843 WP_007499966.1 DegV family protein -
  RZ534_RS17080 (RZ534_17080) degU 3282547..3283236 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  RZ534_RS17085 (RZ534_17085) degS 3283301..3284476 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  RZ534_RS17090 (RZ534_17090) - 3284698..3285366 (+) 669 WP_017357860.1 YigZ family protein -
  RZ534_RS17095 (RZ534_17095) - 3285351..3286442 (+) 1092 WP_317328097.1 LCP family protein -
  RZ534_RS17100 (RZ534_17100) - 3286479..3287546 (-) 1068 WP_007499956.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=892158 RZ534_RS17080 WP_008348273.1 3282547..3283236(-) (degU) [Bacillus altitudinis strain RS1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=892158 RZ534_RS17080 WP_008348273.1 3282547..3283236(-) (degU) [Bacillus altitudinis strain RS1]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACTCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATAAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996