Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   RZ534_RS17070 Genome accession   NZ_CP136643
Coordinates   3279994..3281373 (-) Length   459 a.a.
NCBI ID   WP_394804960.1    Uniprot ID   -
Organism   Bacillus altitudinis strain RS1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3274994..3286373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZ534_RS17035 (RZ534_17035) flgL 3275177..3276088 (-) 912 WP_017368141.1 flagellar hook-associated protein FlgL -
  RZ534_RS17040 (RZ534_17040) flgK 3276097..3277617 (-) 1521 WP_317328095.1 flagellar hook-associated protein FlgK -
  RZ534_RS17045 (RZ534_17045) - 3277633..3278115 (-) 483 WP_007499977.1 flagellar protein FlgN -
  RZ534_RS17050 (RZ534_17050) flgM 3278134..3278397 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  RZ534_RS17055 (RZ534_17055) - 3278477..3278896 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  RZ534_RS17060 (RZ534_17060) - 3278953..3279675 (-) 723 WP_390308590.1 ComF family protein -
  RZ534_RS17065 (RZ534_17065) - 3279636..3279929 (-) 294 WP_035701582.1 late competence development ComFB family protein -
  RZ534_RS17070 (RZ534_17070) comFA 3279994..3281373 (-) 1380 WP_394804960.1 DEAD/DEAH box helicase Machinery gene
  RZ534_RS17075 (RZ534_17075) - 3281493..3282335 (-) 843 WP_007499966.1 DegV family protein -
  RZ534_RS17080 (RZ534_17080) degU 3282547..3283236 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  RZ534_RS17085 (RZ534_17085) degS 3283301..3284476 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  RZ534_RS17090 (RZ534_17090) - 3284698..3285366 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52618.20 Da        Isoelectric Point: 9.9737

>NTDB_id=892157 RZ534_RS17070 WP_394804960.1 3279994..3281373(-) (comFA) [Bacillus altitudinis strain RS1]
MNLEKAMELSHKLQSRHLLPVECQCTQSELEWLENQGFIHRTPAVDRVSSGLICCRCGVSNKRYFALSPCETCKKECVYC
RSCIMLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVIELEPRMRKAFQGLNIASLYGGSSQRFQMAPLMITTTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKRLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQVQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFTESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNSAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=892157 RZ534_RS17070 WP_394804960.1 3279994..3281373(-) (comFA) [Bacillus altitudinis strain RS1]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCACCTTCTTCCTGTTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTTATCCATAGAACACCTGCTGTCGATAGGGTGTCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGAATGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGTGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACAAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCACGGAATAAAATATGCGTTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTAATTGAGCTTGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTTCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCACCGCTTATGATCACTACAACCC
ATCAGCTAATGAGATATAAAAACGCTTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAA
CGGCTTCAGTTTGCTGTTTTAAAATCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAGGATGTTGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAGATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGT
TCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGGT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTACAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGT
GTACTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATTCAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(320-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.454

97.386

0.501