Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RZ534_RS15370 Genome accession   NZ_CP136643
Coordinates   2945052..2945693 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain RS1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2940052..2950693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZ534_RS15335 (RZ534_15335) - 2941180..2941611 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  RZ534_RS15340 (RZ534_15340) - 2941611..2941952 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  RZ534_RS15345 (RZ534_15345) - 2941945..2943423 (+) 1479 WP_265786131.1 Na+/H+ antiporter subunit D -
  RZ534_RS15350 (RZ534_15350) - 2943430..2943909 (+) 480 WP_017358944.1 Na+/H+ antiporter subunit E -
  RZ534_RS15355 (RZ534_15355) - 2943909..2944190 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  RZ534_RS15360 (RZ534_15360) mnhG 2944174..2944548 (+) 375 WP_035701201.1 monovalent cation/H(+) antiporter subunit G -
  RZ534_RS15365 (RZ534_15365) - 2944639..2945028 (-) 390 WP_008345855.1 hotdog fold thioesterase -
  RZ534_RS15370 (RZ534_15370) comA 2945052..2945693 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  RZ534_RS15375 (RZ534_15375) comP 2945774..2948080 (-) 2307 WP_079920597.1 ATP-binding protein Regulator
  RZ534_RS15380 (RZ534_15380) comX 2948094..2948264 (-) 171 WP_017358941.1 competence pheromone ComX -
  RZ534_RS15385 (RZ534_15385) - 2948242..2949165 (-) 924 WP_317327946.1 polyprenyl synthetase family protein -
  RZ534_RS15390 (RZ534_15390) degQ 2949317..2949457 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  RZ534_RS15395 (RZ534_15395) - 2949963..2950316 (+) 354 WP_019744042.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=892151 RZ534_RS15370 WP_007500477.1 2945052..2945693(-) (comA) [Bacillus altitudinis strain RS1]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=892151 RZ534_RS15370 WP_007500477.1 2945052..2945693(-) (comA) [Bacillus altitudinis strain RS1]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCTATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718