Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   OCV04_RS09885 Genome accession   NZ_AP024893
Coordinates   2119530..2121773 (-) Length   747 a.a.
NCBI ID   WP_171137544.1    Uniprot ID   -
Organism   Vibrio plantisponsor strain CECT 7581     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2114530..2126773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV04_RS09865 kdsB 2115817..2116572 (-) 756 WP_171137542.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OCV04_RS09870 - 2116572..2116751 (-) 180 WP_102940655.1 Trm112 family protein -
  OCV04_RS09875 lpxK 2116732..2117739 (-) 1008 WP_171137543.1 tetraacyldisaccharide 4'-kinase -
  OCV04_RS09880 msbA 2117749..2119497 (-) 1749 WP_102940706.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  OCV04_RS09885 comEC 2119530..2121773 (-) 2244 WP_171137544.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OCV04_RS09890 - 2121782..2122297 (+) 516 WP_171137545.1 DUF2062 domain-containing protein -
  OCV04_RS09895 lolE 2122445..2123689 (-) 1245 WP_171137546.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  OCV04_RS09900 lolD 2123689..2124375 (-) 687 WP_171137547.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  OCV04_RS09905 lolC 2124368..2125576 (-) 1209 WP_171137548.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  OCV04_RS09910 - 2125826..2126395 (+) 570 WP_171137549.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 84121.08 Da        Isoelectric Point: 8.1838

>NTDB_id=89214 OCV04_RS09885 WP_171137544.1 2119530..2121773(-) (comEC) [Vibrio plantisponsor strain CECT 7581]
MTLLSKNWTLASFSLTVLSSPYWPYMPDLGFALFCPLFIFLSVRFTKLRSWGGIVLALLVIITHGNVVKTQSSSIFQAGL
DITIKGKVDSFFKQISYGYEGSVAVHQINDQSVTTWFPPRIRLISPLPLQIGDHFEFSVKVKPVVGRLNEVGFDAESYSL
SQGWVARASVVNNSRFQISSGLSLRNWIYDTVQKQISDSPFKGMITALMFGERSGLSQTDWMQLRNSGLIHLVAISGLHI
GIAFGIGYVLGLGVSRLHPMFVWLPFILGASFAVSYAWLAGFTLPTQRALIMCLLNVLLIALRIHVSVSRRILLTLAAVL
IIDPFASLASSFWLSFIAVCIVIYLCSITAQWKQWWTRFIAGQVMLVLMMAPVSAYFFGGVSWVSTLFNMAFIPWFSFLI
IPVLFVAVIATCLDFPHIDGLWQLVDFSFQPLAHALPYATSGWIAVSEWLLQLMLVLTLVWLLRMVVSRFSQMLLTIVLI
STLLFRTPPYDWRMDVLDVGHGLAVLIEKGGKTLLYDTGSSWENGSYVRSVIVPLLAKRGTDTIDAAIYSHFDDDHAGGR
KDVDQLLLPRNVYSSQYIEEALACVRGEEWLWQGLHFSVLWPPKRVERAFNQHSCVVRVSDMKHAHSVLLSGDVTAVGEW
LLARDNEMLQSDVMIVPHHGSKTSSTQAFIERVSPQIAIASLDKTNRWNLPHPEIVDRYTSFGSEWYDTGESGQITLQYR
AESRHLSTLRQDGILPWYRQMLRKEVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=89214 OCV04_RS09885 WP_171137544.1 2119530..2121773(-) (comEC) [Vibrio plantisponsor strain CECT 7581]
ATGACTCTCTTATCGAAAAATTGGACGCTTGCTTCGTTTTCGCTCACTGTTTTGTCATCGCCCTATTGGCCATATATGCC
AGATTTGGGTTTTGCGCTATTTTGCCCACTTTTTATCTTTCTTAGTGTTCGATTCACTAAGCTTAGAAGCTGGGGCGGGA
TCGTACTCGCTTTGCTAGTGATAATAACACATGGCAACGTAGTAAAAACTCAATCCAGTAGCATTTTTCAAGCAGGGCTG
GATATTACCATAAAAGGAAAAGTTGACAGCTTTTTTAAACAAATAAGTTATGGATACGAAGGTTCTGTTGCCGTACATCA
AATAAATGACCAATCTGTCACTACATGGTTCCCTCCTCGTATTCGCTTAATATCACCTTTGCCGTTGCAAATTGGCGATC
ACTTTGAATTTTCAGTCAAAGTGAAACCTGTTGTTGGCAGGTTGAATGAAGTTGGATTTGATGCCGAATCCTACTCTTTA
AGCCAAGGTTGGGTAGCTAGGGCATCGGTCGTTAACAATTCCCGCTTTCAGATTAGCTCCGGATTAAGTCTGCGAAACTG
GATTTACGACACGGTTCAAAAACAAATATCAGATAGCCCATTTAAGGGAATGATCACCGCTTTAATGTTCGGTGAGCGTT
CTGGGTTGAGCCAAACAGATTGGATGCAACTGAGAAACAGCGGGTTGATTCATCTGGTGGCGATTTCCGGTTTGCATATA
GGCATTGCATTCGGGATAGGGTATGTACTTGGCCTAGGAGTATCAAGACTCCATCCTATGTTCGTTTGGCTTCCTTTTAT
TTTGGGCGCATCGTTCGCGGTGAGCTATGCGTGGCTTGCTGGCTTTACGTTGCCGACGCAGCGAGCACTGATTATGTGTC
TGCTCAATGTGCTGCTTATTGCCTTACGGATTCATGTATCTGTATCTCGGCGAATTTTACTTACGCTAGCGGCAGTCTTG
ATAATTGACCCGTTTGCTTCTTTAGCAAGCAGTTTCTGGCTTTCGTTTATTGCCGTTTGTATCGTTATTTATCTCTGTTC
AATCACCGCACAATGGAAACAGTGGTGGACGCGATTTATCGCAGGACAGGTGATGTTGGTGCTGATGATGGCACCTGTAA
GTGCTTACTTCTTTGGTGGAGTAAGCTGGGTATCAACCCTGTTCAATATGGCTTTTATTCCTTGGTTCTCTTTTCTTATC
ATTCCTGTACTTTTTGTGGCGGTAATTGCTACTTGCCTTGATTTCCCCCATATCGACGGTTTGTGGCAACTAGTCGATTT
TTCCTTTCAACCACTGGCGCATGCGCTCCCTTATGCGACTTCAGGTTGGATTGCCGTCAGTGAATGGCTGCTTCAGTTGA
TGCTAGTTTTGACCCTAGTTTGGCTACTGCGGATGGTTGTGAGCCGCTTTAGCCAAATGTTGCTAACGATAGTTCTGATC
TCAACCCTGTTGTTTAGAACTCCGCCATATGACTGGCGGATGGATGTGCTCGATGTTGGTCACGGTCTGGCTGTTTTGAT
CGAAAAAGGAGGTAAAACATTGCTTTACGATACAGGAAGCAGTTGGGAGAACGGCAGCTATGTTCGTTCTGTGATTGTAC
CGCTGCTTGCAAAAAGGGGAACAGACACGATTGATGCAGCGATATACAGCCATTTCGATGATGATCATGCCGGTGGCAGA
AAGGATGTCGACCAGCTACTGCTACCTCGCAATGTGTATTCCAGTCAGTATATCGAAGAGGCTTTGGCATGCGTGCGGGG
CGAAGAGTGGCTGTGGCAAGGTCTGCATTTCTCTGTGCTATGGCCGCCAAAGCGAGTCGAGCGGGCCTTCAATCAGCATT
CATGTGTAGTCCGCGTTTCAGATATGAAGCATGCTCACAGCGTATTGCTTTCTGGAGATGTTACTGCTGTTGGTGAATGG
TTGCTGGCTCGAGATAATGAGATGTTGCAAAGTGATGTAATGATCGTTCCTCATCATGGCAGCAAAACCTCTTCTACACA
GGCATTTATTGAGCGTGTGTCACCTCAAATAGCGATTGCATCGTTAGATAAAACGAATCGATGGAACCTTCCTCACCCTG
AGATCGTCGATAGGTACACCAGTTTCGGCTCTGAATGGTACGACACAGGAGAGAGCGGTCAGATAACTTTGCAATATAGA
GCAGAAAGTCGTCACTTATCTACTCTACGGCAAGATGGGATTCTCCCTTGGTATAGGCAGATGCTGCGTAAAGAGGTAGA
ATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(26-170)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-679)

Competence protein (Competence)

(208-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

51.673

100

0.517
  comEC Vibrio campbellii strain DS40M4

44.459

100

0.451
  comEC Vibrio parahaemolyticus RIMD 2210633

44.327

100

0.45

Multiple sequence alignment