Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RAS18_RS17605 Genome accession   NZ_CP136635
Coordinates   3505432..3506121 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3500432..3511121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS17570 - 3500611..3501093 (-) 483 WP_061570804.1 flagellar protein FlgN -
  RAS18_RS17575 flgM 3501109..3501369 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  RAS18_RS17580 - 3501449..3501868 (-) 420 WP_106044747.1 TIGR03826 family flagellar region protein -
  RAS18_RS17585 comFC 3501940..3502662 (-) 723 WP_148666412.1 double zinc ribbon domain-containing protein Machinery gene
  RAS18_RS17590 - 3502626..3502922 (-) 297 WP_010790084.1 late competence development ComFB family protein -
  RAS18_RS17595 comFA 3502979..3504376 (-) 1398 WP_406620965.1 ATP-dependent helicase ComFA Machinery gene
  RAS18_RS17600 - 3504483..3505325 (-) 843 WP_061570956.1 DegV family protein -
  RAS18_RS17605 degU 3505432..3506121 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RAS18_RS17610 degS 3506198..3507361 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  RAS18_RS17615 - 3507579..3508232 (+) 654 WP_003326713.1 YigZ family protein -
  RAS18_RS17620 - 3508232..3509455 (+) 1224 WP_406620966.1 LCP family protein -
  RAS18_RS17625 - 3509545..3510621 (-) 1077 WP_214916312.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=892063 RAS18_RS17605 WP_003219701.1 3505432..3506121(-) (degU) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=892063 RAS18_RS17605 WP_003219701.1 3505432..3506121(-) (degU) [Bacillus atrophaeus subsp. globigii strain Hab-5]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAATTATTTCGTGAAGGTGTTAAGCGAATATTAGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCAGCTCGTATTGTTGAGCACTATCATCCTGACGTAGTCA
TTATGGATATTAATATGCCGAATGTAAATGGTGTGGAAGCTACTAAGCAGCTTGTAGAGCTGTATCCCGAATCAAAAGTA
ATTATCTTGTCTATTCATGATGATGAAAATTATGTGACACATGCCTTAAAAACAGGCGCAAGAGGTTATCTACTGAAAGA
AATGGACGCTGATACTTTGATCGAAGCAGTTAAAGTGGTGGCGGAAGGCGGTTCATATCTCCATCCGAAGGTCACTCACA
ATCTTGTAAACGAGTTTCGACGTCTTGCAACAAGCGGAGTTTCTGCCCATCCTCAGCATGAGGTGTATCCGGAAATTCGG
AGACCATTACATATTCTAACCAGGCGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGTAAAAGCAACCGCGGTATAGG
TGAATCACTATTTATCAGTGAAAAAACAGTCAAAAATCATGTCAGCAATATTTTGCAAAAAATGAACGTAAACGATCGGA
CGCAAGCAGTTGTGGTCGCGATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1