Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   RAS18_RS17595 Genome accession   NZ_CP136635
Coordinates   3502979..3504376 (-) Length   465 a.a.
NCBI ID   WP_406620965.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3497979..3509376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS17560 flgL 3498163..3499059 (-) 897 WP_406620963.1 flagellar hook-associated protein FlgL -
  RAS18_RS17565 flgK 3499071..3500594 (-) 1524 WP_406620964.1 flagellar hook-associated protein FlgK -
  RAS18_RS17570 - 3500611..3501093 (-) 483 WP_061570804.1 flagellar protein FlgN -
  RAS18_RS17575 flgM 3501109..3501369 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  RAS18_RS17580 - 3501449..3501868 (-) 420 WP_106044747.1 TIGR03826 family flagellar region protein -
  RAS18_RS17585 comFC 3501940..3502662 (-) 723 WP_148666412.1 double zinc ribbon domain-containing protein Machinery gene
  RAS18_RS17590 - 3502626..3502922 (-) 297 WP_010790084.1 late competence development ComFB family protein -
  RAS18_RS17595 comFA 3502979..3504376 (-) 1398 WP_406620965.1 ATP-dependent helicase ComFA Machinery gene
  RAS18_RS17600 - 3504483..3505325 (-) 843 WP_061570956.1 DegV family protein -
  RAS18_RS17605 degU 3505432..3506121 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RAS18_RS17610 degS 3506198..3507361 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  RAS18_RS17615 - 3507579..3508232 (+) 654 WP_003326713.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53192.68 Da        Isoelectric Point: 9.9859

>NTDB_id=892062 RAS18_RS17595 WP_406620965.1 3502979..3504376(-) (comFA) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MQTELKKKPLFSADLQQFLHQRHLLRTEIPFSEEIINWHIEHGFISAEKSIIKNKKGYLCNRCGQNDQRYFSSYWSCSDE
KNQMYCRSCVMMGRVSENIFLYSWIKEVEARWQPIKLTWEGKLSLGQQRAADILIDAITKREELLIWAVCGAGKTEILFP
GIEFALNQGFRVCIATPRTDVVLELTPRLETAFQTSKVSALYGGSEDNGSLSPLMISTTHQLLRYKEAFDVIIIDEVDAF
PYSADQTLQFAVQKARKKNSTLIYLSATPSKELKKKAHIGKLKSVRIPARHHRKPLPEPRFCWCGNWQKKLAGSKIPKQV
KIWVEQHVKEGRPVFLFVPSVSVLEKVTACFAGMRYRTVGVHAEDKNRKEKVQQFRDGRLDVLITTTILERGVTVPMVQT
GVLGAESPIFTESALVQIAGRTGRHKKHAQGDVIYFHFGKTKSMIDARNHINEMNKLARKNELID

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=892062 RAS18_RS17595 WP_406620965.1 3502979..3504376(-) (comFA) [Bacillus atrophaeus subsp. globigii strain Hab-5]
ATGCAGACTGAGTTGAAAAAGAAACCTTTATTCTCTGCTGATCTGCAGCAGTTCCTTCATCAGCGCCACTTGCTTAGAAC
TGAAATCCCATTCTCTGAGGAAATTATCAACTGGCATATTGAGCATGGTTTTATTTCCGCTGAAAAATCAATCATCAAAA
ATAAAAAGGGTTATTTGTGTAACAGGTGCGGCCAAAATGACCAGCGGTATTTTTCTTCCTACTGGTCATGCTCAGATGAA
AAAAATCAAATGTATTGCCGTTCGTGTGTCATGATGGGAAGAGTAAGCGAGAACATTTTCTTATATTCATGGATAAAGGA
GGTGGAAGCAAGGTGGCAGCCTATAAAACTTACTTGGGAAGGTAAACTCTCTCTTGGACAGCAAAGAGCCGCGGATATTT
TAATTGACGCGATAACTAAAAGGGAAGAGCTTCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAAATATTATTCCCG
GGAATTGAGTTTGCGTTAAATCAGGGATTTCGTGTATGTATTGCAACACCGCGCACCGATGTCGTACTAGAGCTTACTCC
AAGGCTGGAAACCGCCTTTCAGACCTCAAAGGTCTCAGCCCTTTACGGAGGGAGTGAAGATAATGGGAGCTTGTCCCCGC
TGATGATTTCAACGACACATCAGCTATTACGTTACAAAGAAGCATTTGACGTCATCATCATAGACGAAGTTGATGCTTTT
CCTTATTCTGCTGATCAAACTCTCCAGTTTGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCATTTATTTAAGTGC
AACACCTTCCAAAGAATTAAAAAAGAAAGCGCATATAGGGAAGTTAAAATCGGTTCGCATACCCGCAAGACATCATCGGA
AACCATTGCCTGAACCACGTTTTTGCTGGTGCGGAAACTGGCAAAAAAAATTAGCCGGAAGCAAAATTCCGAAACAGGTG
AAAATATGGGTAGAACAGCATGTGAAAGAAGGCAGACCTGTTTTTTTATTTGTGCCGTCTGTTTCCGTTTTAGAGAAGGT
TACTGCCTGTTTCGCCGGCATGAGATATCGGACAGTGGGTGTGCATGCGGAAGATAAGAACCGAAAAGAGAAAGTACAGC
AATTCAGGGACGGCCGGCTTGATGTATTAATCACAACGACCATATTAGAAAGAGGAGTTACTGTTCCAATGGTGCAGACT
GGCGTATTGGGAGCTGAATCGCCTATATTTACTGAGAGTGCACTCGTCCAAATCGCCGGAAGGACAGGGCGGCATAAAAA
ACATGCTCAGGGTGACGTCATATATTTTCACTTTGGAAAAACAAAGAGTATGATAGATGCCAGAAATCATATAAACGAAA
TGAATAAATTGGCAAGAAAAAACGAATTAATAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(123-270)

Helicase conserved C-terminal domain (Helicase_C)

(326-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

75.699

100

0.757