Detailed information NTG0891894

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: RI844_RS08705
• Genome accession: NZ_CP136600
• Coordinates: 2132584..2133696 (-)
• Length: 370 a.a.
• NCBI ID: WP_348398056.1
• Uniprot ID: -
• Organism: Thalassotalea fonticola strain S1-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2127584..2138696

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RI844_RS08690 (RI844_08690)	nhaC	2128689..2130200 (+)	1512	WP_348398053.1	Na+/H+ antiporter NhaC	-
RI844_RS08695 (RI844_08695)	-	2130197..2131753 (+)	1557	WP_348398054.1	tryptophan halogenase family protein	-
RI844_RS08700 (RI844_08700)	-	2131777..2132505 (+)	729	WP_348398055.1	SapC family protein	-
RI844_RS08705 (RI844_08705)	pilU	2132584..2133696 (-)	1113	WP_348398056.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
RI844_RS08710 (RI844_08710)	pilT	2133710..2134753 (-)	1044	WP_348398057.1	type IV pilus twitching motility protein PilT	Machinery gene
RI844_RS08715 (RI844_08715)	-	2134790..2135473 (+)	684	WP_348398058.1	YggS family pyridoxal phosphate-dependent enzyme	-
RI844_RS08720 (RI844_08720)	proC	2135557..2136372 (+)	816	WP_348398059.1	pyrroline-5-carboxylate reductase	-
RI844_RS08725 (RI844_08725)	-	2136448..2136996 (+)	549	WP_348398060.1	YggT family protein	-
RI844_RS08730 (RI844_08730)	-	2137097..2137540 (+)	444	WP_348398061.1	DUF4426 domain-containing protein	-
RI844_RS08735 (RI844_08735)	-	2137650..2138240 (+)	591	WP_348398062.1	XTP/dITP diphosphatase	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 40836.79 Da
• Isoelectric Point: 5.1573

>NTDB_id=891894 RI844_RS08705 WP_348398056.1 2132584..2133696(-) (pilU) [Thalassotalea fonticola strain S1-1]
MYLHQLLQAMVKEDASDLFITVNLSASAKINGELQPVDEKVLSFDDALALVHSSMTEKQITEFTETKECNYAIAIDDIGR
FRISAFWQREMPGMVVRRIVTDIPDTEKLGLPPVLKELVMSKRGLLLFVGGTGTGKSTSMASLIGYRNRNARGHILTIED
PVEFVHEHGKSMITQREVGMDTESFDAALKSSLRQAPDVILIGEIRSQDIMEHALSFAETGHLCIATLHANNANQAIDRI
MHLVPPEQHEKLQFDLALNLRGIVAQQLVPTRDGLGRKAAIEILLNSPYVSELIKKGAVGDIKEVMAKSRELGMQTFDQA
LFDLYEAGEISYTDALHNADSPNDLRLMIKLRSNDQTGIGGLKGATLDGD

Nucleotide

• Length: 1113 bp

>NTDB_id=891894 RI844_RS08705 WP_348398056.1 2132584..2133696(-) (pilU) [Thalassotalea fonticola strain S1-1]
ATGTATTTACACCAATTACTACAAGCCATGGTGAAAGAGGATGCCTCTGATTTATTTATCACCGTTAATCTTTCTGCCAG
TGCCAAAATTAATGGCGAATTACAGCCGGTTGATGAAAAAGTATTAAGCTTTGACGACGCCTTAGCGTTAGTTCATAGTT
CAATGACGGAAAAGCAAATTACTGAATTTACTGAAACTAAAGAATGTAACTACGCCATCGCGATAGATGACATTGGCCGT
TTTCGTATTTCTGCGTTTTGGCAACGTGAAATGCCAGGCATGGTTGTGCGCCGCATTGTTACTGACATACCGGATACCGA
AAAACTTGGTTTACCACCAGTGTTAAAAGAGTTGGTGATGTCGAAACGTGGTTTATTATTATTCGTTGGTGGTACCGGTA
CGGGTAAATCAACGTCGATGGCATCATTAATTGGTTATCGTAACCGTAATGCTCGCGGTCATATTCTTACTATTGAAGAT
CCGGTTGAATTTGTTCATGAACACGGTAAATCGATGATCACTCAACGTGAAGTAGGCATGGATACCGAGTCTTTTGATGC
TGCGCTTAAGAGTTCATTACGCCAAGCGCCTGATGTTATCTTAATTGGTGAAATCCGCTCACAAGATATTATGGAGCACG
CATTAAGTTTTGCCGAAACCGGCCATTTATGTATTGCTACGTTGCATGCTAATAATGCTAACCAAGCCATTGACCGGATT
ATGCATTTAGTACCGCCAGAGCAACATGAAAAGCTGCAGTTCGATTTAGCCTTAAACTTGCGCGGTATTGTTGCTCAACA
ACTTGTACCAACTCGTGATGGCTTAGGCCGTAAAGCGGCAATTGAGATTTTACTAAATTCACCTTATGTATCTGAACTTA
TTAAAAAAGGTGCGGTTGGTGACATTAAAGAAGTTATGGCAAAGTCGCGTGAATTAGGCATGCAAACGTTTGATCAGGCA
TTATTCGATTTATACGAAGCAGGGGAGATCAGCTACACCGACGCCTTGCATAATGCCGATTCACCGAATGATTTACGCTT
AATGATCAAACTTCGCAGTAATGATCAAACTGGCATAGGTGGTCTTAAAGGCGCTACTTTAGATGGCGATTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (12-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	59.207	95.405	0.565
pilU	Acinetobacter baylyi ADP1	59.375	95.135	0.565
pilU	Vibrio cholerae strain A1552	55.978	99.459	0.557
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.292	96.216	0.397