Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCV27_RS13630 Genome accession   NZ_AP024889
Coordinates   2958418..2959050 (+) Length   210 a.a.
NCBI ID   WP_009602948.1    Uniprot ID   A0A432CTS7
Organism   Vibrio pectenicida strain LMG 19642     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2953418..2964050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV27_RS13605 - 2953581..2955503 (+) 1923 WP_125320757.1 ABC transporter ATP-binding protein -
  OCV27_RS13610 - 2955500..2955979 (+) 480 WP_125320758.1 TIGR02444 family protein -
  OCV27_RS13615 - 2955988..2956965 (+) 978 WP_125320759.1 hydrolase -
  OCV27_RS13620 - 2957005..2957223 (+) 219 WP_125320760.1 YheU family protein -
  OCV27_RS13625 - 2957306..2958175 (+) 870 WP_125320761.1 phosphoribulokinase -
  OCV27_RS13630 crp 2958418..2959050 (+) 633 WP_009602948.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCV27_RS13635 - 2959175..2960038 (+) 864 WP_125320762.1 hypothetical protein -
  OCV27_RS13640 - 2960088..2960885 (-) 798 WP_125320763.1 DUF1338 domain-containing protein -
  OCV27_RS13645 astD 2960986..2962443 (-) 1458 WP_125320764.1 succinylglutamate-semialdehyde dehydrogenase -
  OCV27_RS13650 astA 2962461..2963480 (-) 1020 WP_125320765.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23612.37 Da        Isoelectric Point: 7.4009

>NTDB_id=89189 OCV27_RS13630 WP_009602948.1 2958418..2959050(+) (crp) [Vibrio pectenicida strain LMG 19642]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSSQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=89189 OCV27_RS13630 WP_009602948.1 2958418..2959050(+) (crp) [Vibrio pectenicida strain LMG 19642]
ATGGTTCTAGGTAAACCTCAAACTGATCCAACATTAGAATGGTTCCTTTCACACTGTCATATTCATAAGTACCCATCTAA
GAGCACATTGATCCATGCTGGTGAGAAAGCGGAGACGCTTTACTACATAGTCAAAGGTTCAGTTGCGGTACTTATCAAAG
ACGAAGAAGGCAAGGAAATGATACTGTCTTACCTAAACCAAGGTGACTTTATCGGTGAGCTTGGTTTGTTCGAAGAAGAC
CAAGAGCGTACAGCATGGGTTAGAGCTAAGTCGCCTTGTGAAGTAGCGGAGATTTCGTTCAAGAAATTCCGCCAACTTAT
TCAAGTCAATCCTGATATCCTAATGCGCCTATCTTCACAGATGGCGAGTCGCTTGCAAGTGACCAGCCAAAAAGTGGGTG
ACCTTGCTTTCTTGGATGTAACTGGCCGCATTGCGCAGACACTACTAAATCTAGCTAAGCAGCCTGATGCAATGACACAC
CCAGACGGCATGCAGATCAAGATTACTCGCCAAGAAATTGGCCAGATTGTTGGCTGTTCACGTGAAACGGTTGGTCGTAT
CTTGAAGATGTTGGAAGAGCAAAATCTAATTTCAGCACATGGTAAAACGATCGTCGTATACGGCACTCGATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A432CTS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

74.51

97.143

0.724
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment