Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   AAEU35_RS07850 Genome accession   NZ_CP152294
Coordinates   1583713..1584306 (+) Length   197 a.a.
NCBI ID   WP_003131995.1    Uniprot ID   Q9CDL2
Organism   Lactococcus lactis strain Q13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1578713..1589306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEU35_RS07840 - 1580808..1581503 (+) 696 WP_010906384.1 hypothetical protein -
  AAEU35_RS07845 hexB 1581633..1583603 (+) 1971 WP_058223262.1 DNA mismatch repair endonuclease MutL Machinery gene
  AAEU35_RS07850 ruvA 1583713..1584306 (+) 594 WP_003131995.1 Holliday junction branch migration protein RuvA Machinery gene
  AAEU35_RS07855 ruvB 1584433..1585434 (+) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  AAEU35_RS07860 - 1585583..1586020 (+) 438 WP_058211770.1 low molecular weight protein-tyrosine-phosphatase -
  AAEU35_RS07865 - 1586121..1586486 (+) 366 WP_003131985.1 MerR family transcriptional regulator -
  AAEU35_RS07870 glnA 1586548..1587888 (+) 1341 WP_003131984.1 type I glutamate--ammonia ligase -
  AAEU35_RS07875 - 1587947..1588147 (-) 201 WP_058223263.1 hypothetical protein -
  AAEU35_RS07880 - 1588365..1588811 (+) 447 WP_003131961.1 hypothetical protein -
  AAEU35_RS07885 - 1588900..1589172 (-) 273 WP_003131960.1 chorismate mutase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21166.73 Da        Isoelectric Point: 5.8174

>NTDB_id=891820 AAEU35_RS07850 WP_003131995.1 1583713..1584306(+) (ruvA) [Lactococcus lactis strain Q13]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=891820 AAEU35_RS07850 WP_003131995.1 1583713..1584306(+) (ruvA) [Lactococcus lactis strain Q13]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGTTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCTGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGTGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTGCAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CDL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462